Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14e04
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0091 + 5574528-5577254                                           29   4.1  
12_02_0280 - 16729000-16729678,16729948-16730039,16730072-167307...    29   5.4  
05_04_0293 - 19898254-19898819,19899698-19899701                       28   9.4  
04_04_0505 + 25719959-25720052,25721548-25722266                       28   9.4  

>03_02_0091 + 5574528-5577254
          Length = 908

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -3

Query: 314 ILLQSCVLHAALWYVTNMKIAVLRSSVCLGQLSSEMAYKTASFFNKVRFA 165
           + L   V  AALW   ++  A  R  VC G +S     K   FF + R A
Sbjct: 481 VKLHGVVRGAALWIARDLGKAPNRWVVCTGGVSLRSRQKLVEFFERARDA 530


>12_02_0280 -
           16729000-16729678,16729948-16730039,16730072-16730772,
           16731033-16731144,16731961-16731970,16732954-16733663
          Length = 767

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -1

Query: 346 NKFSSLLHLPVFYYNHVYSMRPYGMLQI*RLRSSAPVFASVSFQAKWLTRLPVFSTRFDS 167
           N  +SL+ L      HV S +PY    I RLR+SAP    +  +A W+    +      +
Sbjct: 543 NDVTSLIELRC---RHVSSGQPYSSKVITRLRTSAPPIWVIIRRAFWMVHRLIIRKSIHT 599

Query: 166 LP 161
           +P
Sbjct: 600 VP 601


>05_04_0293 - 19898254-19898819,19899698-19899701
          Length = 189

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 329 PPFACILLQSCVLHAAL 279
           PP AC +LQ C LH+ L
Sbjct: 82  PPLACAILQECELHSYL 98


>04_04_0505 + 25719959-25720052,25721548-25722266
          Length = 270

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/41 (41%), Positives = 19/41 (46%)
 Frame = -3

Query: 158 AVPALVLNRVHRPVRRVCDAPRPARHTSHDSVTLI*CHNGS 36
           A P     R+    RR  D PRPAR   H +VTL   H  S
Sbjct: 79  ATPPKSYGRLLGRRRRHRDLPRPARGVDHPAVTLRGLHPSS 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,121,124
Number of Sequences: 37544
Number of extensions: 330832
Number of successful extensions: 646
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)