Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14e02
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    31   0.13 
SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase [UDP-...    28   1.2  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   4.9  
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac...    26   6.5  
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    25   8.6  
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo...    25   8.6  

>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = -3

Query: 484 NMNTRNKHRLALPAARIKKISNSFRGLGVQLFNKIPQNVQLLPVHRF 344
           +MN +N H L  P   +  +S S +GL +   N+  Q   L  VH +
Sbjct: 121 DMNEKNPHDLWNPTVPMAYLSRSLQGLTISKINETEQKFPLSSVHAY 167


>SPAC328.03 |tps1||alpha,alpha-trehalose-phosphate synthase
           [UDP-forming]|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
 Frame = -3

Query: 610 RESLRDKFKEIKI-----LTLASQYIFENLLYVRKNIVEFPRVCDLHNMNTRNKHRLALP 446
           RE + DKFK+IKI         S  I+  +L VR  I+E    CDL   +T +  R  L 
Sbjct: 169 RELIGDKFKDIKIGFFLHTPFPSSEIY-RVLPVRNEILEGVLNCDLVGFHTYDYARHFLS 227

Query: 445 A-ARIKKISNSFRGL 404
           A +RI  +S    G+
Sbjct: 228 ACSRILNLSTLPNGV 242


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 394 LFNKIPQNVQLLPVHRFKKTVKERLCNKAY 305
           +FN +P +     +H  K T+  RLC K++
Sbjct: 520 VFNDVPYSEIDSQLHTIKSTIAARLCGKSH 549


>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
           S17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 131

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 9/37 (24%), Positives = 21/37 (56%)
 Frame = +2

Query: 383 LVEKLYTQPPERVAYFLNSSRRQRKPMFVPSVHIMQI 493
           L++++   P   +++ L    R+RK  +VP V  +++
Sbjct: 57  LMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEV 93


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 636 FVLFIICTR-GNP*GTSLRKSKF*L*RPNTFLKIY 535
           + ++++CT  GNP  +SL K KF    PN    ++
Sbjct: 261 YTVYMVCTDFGNPNTSSLEKPKFDYLPPNILQSVH 295


>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1065

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
 Frame = -3

Query: 607 ESLRDKFKEIKILTLASQYIFENLLYVRKNIVEFPRVCDLHNMNTRNKH-RLALPAARIK 431
           E+L +   ++K  ++ +   FE +L  R N++E     + H M+    + RL     R+K
Sbjct: 728 EALMNSVLKVKENSIKATNNFEKMLGSRLNVIEAKYKLEKHEMDANQVNARLTEVQDRLK 787

Query: 430 KISN---SFRGLGVQLFNKIPQNVQ 365
            I++   S R   + L+  +  ++Q
Sbjct: 788 DITDKLASAREDAMSLYGSVVDSLQ 812


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,653,856
Number of Sequences: 5004
Number of extensions: 50519
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)