Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d24
         (811 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   2.4  
SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    27   4.2  
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar...    26   5.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   7.3  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    25   9.6  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   9.6  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 567 VSKKFLSLSCTYISTYIILKMFIIDMIYVLVIPK 668
           V +++ SL CT I  Y+I K F ++ ++ LVI K
Sbjct: 744 VFRRYSSLDCTSIVEYVI-KQFKVNQMFDLVILK 776


>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 278 SRYFPGLNTSLRYSNATFYSTLHR 207
           S+ FPG+N S+   N+ FY  ++R
Sbjct: 140 SKLFPGINVSVLTLNSNFYVPVYR 163


>SPAC1B3.08 |||COP9 signalosome complex subunit 12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 423

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/43 (20%), Positives = 25/43 (58%)
 Frame = +3

Query: 549 FYSRFLVSKKFLSLSCTYISTYIILKMFIIDMIYVLVIPKLYM 677
           +Y   L+ K +L L C +++  ++  M ++++  + + PK ++
Sbjct: 189 YYIMGLLFKLYLRLDCVHLTNNVLRAMKVVELPDISLFPKSHV 231


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 499  ISSQIYLSFITTILDSKLKEI*GN*SFNEIFHF 401
            I  Q + SFITT+L+S + E      FNE+  F
Sbjct: 1435 IDLQAHESFITTLLNSAVVEANLENQFNEVHSF 1467


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 551 LFQISCF*KVSFFKLYLHIYIYYLENVYNRYDIRARDTQII 673
           LFQ++C   V  F++ + + I +L N+   Y   + D  ++
Sbjct: 364 LFQLTCSDVVERFQITIMVIIIFLRNLAELYTTSSLDQPLL 404


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = -1

Query: 529 LLNSILNTRFISSQIYLSFITTILDSKLKEI*GN*SFNEIFHFILLSAKKFE 374
           LLN I++   ISS +  S +  +  +K   +  + S  +I   +L +A K+E
Sbjct: 211 LLNCIISYGRISSAVLYSIVEVVCRAKFGLVASSQSAQQIVEKLLKTATKYE 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,926,440
Number of Sequences: 5004
Number of extensions: 59168
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)