Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d24
         (811 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077531-3|AAC64612.2|   71|Caenorhabditis elegans Hypothetical ...    32   0.56 
AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical ...    31   0.74 
AF100307-7|AAC68934.1|  353|Caenorhabditis elegans Hypothetical ...    29   5.2  
Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical pr...    28   6.9  
AF003150-3|AAB54214.1|  208|Caenorhabditis elegans Collagen prot...    28   6.9  
Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical pr...    28   9.1  

>AF077531-3|AAC64612.2|   71|Caenorhabditis elegans Hypothetical
           protein F13C5.4 protein.
          Length = 71

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +2

Query: 539 VLSFLFQISCF*KVSFFKLYLH-IYIYYLENVYN 637
           +L FLFQISC  K++F K+Y   +Y  +L++ +N
Sbjct: 7   ILVFLFQISCSKKINFDKVYKDAMYASFLKSEFN 40


>AC024828-2|AAU87812.1|  462|Caenorhabditis elegans Hypothetical
           protein Y55F3BL.2 protein.
          Length = 462

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -3

Query: 566 KKSGIKKREQIIFIEFNFKYTFYFKSNLFVFYNYYSRF 453
           +K+  KK E IIF E N + T +F    F F+N   +F
Sbjct: 37  RKNSKKKLETIIFYEKNVEKTLFFTKQYFKFFNEKFQF 74


>AF100307-7|AAC68934.1|  353|Caenorhabditis elegans Hypothetical
           protein T12B5.10 protein.
          Length = 353

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/56 (33%), Positives = 30/56 (53%)
 Frame = +3

Query: 462 IVVIKDK*I*LEIKRVFKIEFNKNNLFSLFYSRFLVSKKFLSLSCTYISTYIILKM 629
           I+  K K   +EI +VFK ++   N+F++ YS    + KF  +S    S Y +L M
Sbjct: 295 IIFYKSKTNPIEIAKVFKPDYTGENVFNIEYSN--GNDKF-DISLQEFSYYFLLNM 347


>Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical
           protein H12I19.5b protein.
          Length = 596

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 633 IIDMIYVLVIPKLYM*CEINCYIIF*TPQFLYIK 734
           II +IY+L+I  L   C I C+ I     F+Y K
Sbjct: 152 IIPLIYLLIIRTLPQKCHILCFTILGLFSFMYSK 185


>Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical
           protein H12I19.5a protein.
          Length = 607

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 633 IIDMIYVLVIPKLYM*CEINCYIIF*TPQFLYIK 734
           II +IY+L+I  L   C I C+ I     F+Y K
Sbjct: 152 IIPLIYLLIIRTLPQKCHILCFTILGLFSFMYSK 185


>AF003150-3|AAB54214.1|  208|Caenorhabditis elegans Collagen protein
           55 protein.
          Length = 208

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 638 YYKHFQDNICRYVSTA*RKKLFRNKKSGIKKREQIIFIEFNF 513
           Y KH   +IC   +T+ R KLF+N  SG+     +  + ++F
Sbjct: 3   YLKHVGGDICMRRTTSERVKLFQNIGSGVAVIACLFAVGYSF 44


>Z83123-6|CAD45601.1|  327|Caenorhabditis elegans Hypothetical
           protein T04A11.12 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/28 (53%), Positives = 21/28 (75%), Gaps = 3/28 (10%)
 Frame = +1

Query: 502 NVYLKLNSIKI---ICSLFFIPDFLFLK 576
           NVYL L++I I   +C LFF+ DFL+L+
Sbjct: 67  NVYL-LSAISISQCMCLLFFLADFLYLR 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,510,992
Number of Sequences: 27780
Number of extensions: 310024
Number of successful extensions: 755
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)