Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d22
         (361 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc...    27   0.88 
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    26   2.0  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   2.7  
SPCC1020.03 |||mitochondrial iron ion transporter|Schizosaccharo...    25   4.7  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   6.2  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    24   6.2  
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    24   6.2  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    24   8.2  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    24   8.2  

>SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 27.1 bits (57), Expect = 0.88
 Identities = 9/29 (31%), Positives = 20/29 (68%)
 Frame = +1

Query: 238 LVDFLLVLNRHT**KVLKYFIKYKIDKKL 324
           ++ F+L+ NRH   ++ KY++ +  D+K+
Sbjct: 1   MIQFILIQNRHGKNRLSKYYVPFDDDEKV 29


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 225 KEFKEQVIKTVTRIEESHNVVG 160
           K F+EQV K  ++IE  H V+G
Sbjct: 31  KAFREQVEKHFSKIERLHQVLG 52


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.4 bits (53), Expect = 2.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 184 NPSYCLDYLLLEFLWHFALVDFLLVLN 264
           N +Y   YL  +F+W  + VD+LL+ N
Sbjct: 916 NETYSSMYLAGKFVWDTSDVDYLLMYN 942


>SPCC1020.03 |||mitochondrial iron ion
           transporter|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 397

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -3

Query: 185 LKRVTTLLEFCICQKTPILQDRPGLGKW 102
           L  + TL    IC K P  +   G GKW
Sbjct: 115 LSDLVTLATLKICSKKPTQKYPAGFGKW 142


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 356 FVTHFLKKHIINFLSILYFMKYFNTFY*VCR 264
           F   F    + +F S L+   +FN F+ +CR
Sbjct: 107 FFCFFFYFSLFSFFSFLFTSLHFNFFFRLCR 137


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +3

Query: 51  NNNIYNASRARQHSTGP 101
           N N+ NASR R H T P
Sbjct: 172 NYNLRNASRTRSHQTLP 188


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 151 IQNSNNVVTLFNPSYCLDYLLLEFLWHFALVDFLLVLNR 267
           I++ N+ +  F     L +L++  L+ F L+  LLV+NR
Sbjct: 4   IEDLNHFINYFPLVLRLFFLVVFGLYSFTLILHLLVINR 42


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 74   TGQTTFYRAAICPGLV 121
            +G TTF+R  IC G V
Sbjct: 1085 SGHTTFFRVGICLGKV 1100


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -3

Query: 185 LKRVTTLLEFCICQKTPILQDR 120
           +K +TTLL+F   QK P+++++
Sbjct: 285 IKMITTLLQFEGFQKEPVVREQ 306


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,405,045
Number of Sequences: 5004
Number of extensions: 25779
Number of successful extensions: 76
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)