Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d22
         (361 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0025 + 17298734-17299669                                         27   3.4  
11_08_0011 + 27612206-27615110,27615211-27615538,27615989-276160...    27   5.9  
02_04_0260 - 21350060-21350269,21350544-21350604,21350834-213509...    27   5.9  

>01_05_0025 + 17298734-17299669
          Length = 311

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/58 (24%), Positives = 28/58 (48%)
 Frame = -2

Query: 210 QVIKTVTRIEESHNVVGVLYLSKDADTTG*TRPGQMAAR*NVVWPVKHCIYYY*KPEI 37
           ++I+ + ++E +H +   L L  D    G T  G +     ++ P K   Y++  P+I
Sbjct: 92  ELIRKILQVEGAHGLTFPLLLKSDGTKFGKTEDGAIWLSPKMLSPYKFYQYFFSVPDI 149


>11_08_0011 +
           27612206-27615110,27615211-27615538,27615989-27616059,
           27616962-27617118,27617676-27617709
          Length = 1164

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 23/72 (31%), Positives = 29/72 (40%)
 Frame = +1

Query: 49  LIIIYTMLHGPDNILPGRHLPRPGLSCSIGVF*QIQNSNNVVTLFNPSYCLDYLLLEFLW 228
           L+      H PDNIL G   P       +GV    ++   VV L  P+  L     E   
Sbjct: 41  LLAFKAQFHDPDNILAGNWTPGTPFCQWVGVSCS-RHQQRVVALELPNVPLQG---ELSS 96

Query: 229 HFALVDFLLVLN 264
           H   + FL VLN
Sbjct: 97  HLGNLSFLSVLN 108


>02_04_0260 -
           21350060-21350269,21350544-21350604,21350834-21350901,
           21351274-21351483,21351684-21351724,21351923-21351972,
           21352084-21352172,21352265-21352339,21352539-21352656,
           21352689-21352771,21352854-21352970,21353857-21354074,
           21354184-21354241,21354356-21354508
          Length = 516

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -3

Query: 134 ILQDRPGLGKWRPGRMLSGP*SIVYIIIKNRKY*FLSNH 18
           ++++   LGKW  G  LSGP  I ++    +++ F+ NH
Sbjct: 201 MMKEHSPLGKWIIGMKLSGPQMIKHV----QEFPFIKNH 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,328,142
Number of Sequences: 37544
Number of extensions: 149118
Number of successful extensions: 318
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)