Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d22
         (361 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF244812-1|AAG34567.1|  306|Homo sapiens SCAN domain-containing ...    29   3.3  
AF229246-1|AAG33966.1|  306|Homo sapiens SCAND2 protein.               29   3.3  
Z20656-1|CAA79675.1| 1939|Homo sapiens cardiac alpha-myosin heav...    29   5.7  
M25140-1|AAA60386.1|  177|Homo sapiens MYH6 protein.                   29   5.7  
D87435-1|BAA13379.2| 1880|Homo sapiens KIAA0248 protein.               29   5.7  
D00943-1|BAA00791.1| 1939|Homo sapiens cardiac alpha-myosin heav...    29   5.7  
BC132667-1|AAI32668.1| 1939|Homo sapiens myosin, heavy chain 6, ...    29   5.7  
BC117682-1|AAI17683.1| 1855|Homo sapiens GBF1 protein protein.         29   5.7  
BC032543-1|AAH32543.1|  699|Homo sapiens GBF1 protein protein.         29   5.7  
AL356420-1|CAH72761.1| 1859|Homo sapiens golgi-specific brefeldi...    29   5.7  
AL160011-3|CAH71625.1| 1859|Homo sapiens golgi-specific brefeldi...    29   5.7  
AL121928-2|CAI12515.1| 1859|Homo sapiens golgi-specific brefeldi...    29   5.7  
AF068755-1|AAD15903.1| 1859|Homo sapiens sec7 domain family memb...    29   5.7  

>AF244812-1|AAG34567.1|  306|Homo sapiens SCAN domain-containing
           protein 2 protein.
          Length = 306

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 143 KTPILQDRPGLGKWRPGR 90
           + P+ + RPG G WRPGR
Sbjct: 225 RRPLQRRRPGTGPWRPGR 242


>AF229246-1|AAG33966.1|  306|Homo sapiens SCAND2 protein.
          Length = 306

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 143 KTPILQDRPGLGKWRPGR 90
           + P+ + RPG G WRPGR
Sbjct: 225 RRPLQRRRPGTGPWRPGR 242


>Z20656-1|CAA79675.1| 1939|Homo sapiens cardiac alpha-myosin heavy
           chain protein.
          Length = 1939

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 42  PVFNNNIYNASRARQHSTGPPFAQAWSIL*YRRLLTDTELQ 164
           PV+N  +  A R ++ S  PP   + S   Y+ +LTD E Q
Sbjct: 132 PVYNAEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQ 172


>M25140-1|AAA60386.1|  177|Homo sapiens MYH6 protein.
          Length = 177

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 42  PVFNNNIYNASRARQHSTGPPFAQAWSIL*YRRLLTDTELQ 164
           PV+N  +  A R ++ S  PP   + S   Y+ +LTD E Q
Sbjct: 132 PVYNAEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQ 172


>D87435-1|BAA13379.2| 1880|Homo sapiens KIAA0248 protein.
          Length = 1880

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -2

Query: 306 VFYEIFQHFLLSMSIQYKK-----KINKCKMPKEFKEQVIKTVTRIEESHNVVGVLYLSK 142
           +F  + +H    M +  KK      +   KMP E KE  ++ + ++    + V  LY++ 
Sbjct: 504 LFESMREHLKFQMEMYIKKLMEIITVENPKMPYEMKEMALEAIVQLWRIPSFVTELYINY 563

Query: 141 DAD 133
           D D
Sbjct: 564 DCD 566


>D00943-1|BAA00791.1| 1939|Homo sapiens cardiac alpha-myosin heavy
           chain protein.
          Length = 1939

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 42  PVFNNNIYNASRARQHSTGPPFAQAWSIL*YRRLLTDTELQ 164
           PV+N  +  A R ++ S  PP   + S   Y+ +LTD E Q
Sbjct: 132 PVYNAEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQ 172


>BC132667-1|AAI32668.1| 1939|Homo sapiens myosin, heavy chain 6,
           cardiac muscle, alpha (cardiomyopathy, hypertrophic 1)
           protein.
          Length = 1939

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +3

Query: 42  PVFNNNIYNASRARQHSTGPPFAQAWSIL*YRRLLTDTELQ 164
           PV+N  +  A R ++ S  PP   + S   Y+ +LTD E Q
Sbjct: 132 PVYNAEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQ 172


>BC117682-1|AAI17683.1| 1855|Homo sapiens GBF1 protein protein.
          Length = 1855

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -2

Query: 306 VFYEIFQHFLLSMSIQYKK-----KINKCKMPKEFKEQVIKTVTRIEESHNVVGVLYLSK 142
           +F  + +H    M +  KK      +   KMP E KE  ++ + ++    + V  LY++ 
Sbjct: 483 LFESMREHLKFQMEMYIKKLMEIITVENPKMPYEMKEMALEAIVQLWRIPSFVTELYINY 542

Query: 141 DAD 133
           D D
Sbjct: 543 DCD 545


>BC032543-1|AAH32543.1|  699|Homo sapiens GBF1 protein protein.
          Length = 699

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -2

Query: 306 VFYEIFQHFLLSMSIQYKK-----KINKCKMPKEFKEQVIKTVTRIEESHNVVGVLYLSK 142
           +F  + +H    M +  KK      +   KMP E KE  ++ + ++    + V  LY++ 
Sbjct: 483 LFESMREHLKFQMEMYIKKLMEIITVENPKMPYEMKEMALEAIVQLWRIPSFVTELYINY 542

Query: 141 DAD 133
           D D
Sbjct: 543 DCD 545


>AL356420-1|CAH72761.1| 1859|Homo sapiens golgi-specific brefeldin A
           resistance factor 1 protein.
          Length = 1859

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -2

Query: 306 VFYEIFQHFLLSMSIQYKK-----KINKCKMPKEFKEQVIKTVTRIEESHNVVGVLYLSK 142
           +F  + +H    M +  KK      +   KMP E KE  ++ + ++    + V  LY++ 
Sbjct: 483 LFESMREHLKFQMEMYIKKLMEIITVENPKMPYEMKEMALEAIVQLWRIPSFVTELYINY 542

Query: 141 DAD 133
           D D
Sbjct: 543 DCD 545


>AL160011-3|CAH71625.1| 1859|Homo sapiens golgi-specific brefeldin A
           resistance factor 1 protein.
          Length = 1859

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -2

Query: 306 VFYEIFQHFLLSMSIQYKK-----KINKCKMPKEFKEQVIKTVTRIEESHNVVGVLYLSK 142
           +F  + +H    M +  KK      +   KMP E KE  ++ + ++    + V  LY++ 
Sbjct: 483 LFESMREHLKFQMEMYIKKLMEIITVENPKMPYEMKEMALEAIVQLWRIPSFVTELYINY 542

Query: 141 DAD 133
           D D
Sbjct: 543 DCD 545


>AL121928-2|CAI12515.1| 1859|Homo sapiens golgi-specific brefeldin A
           resistance factor 1 protein.
          Length = 1859

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -2

Query: 306 VFYEIFQHFLLSMSIQYKK-----KINKCKMPKEFKEQVIKTVTRIEESHNVVGVLYLSK 142
           +F  + +H    M +  KK      +   KMP E KE  ++ + ++    + V  LY++ 
Sbjct: 483 LFESMREHLKFQMEMYIKKLMEIITVENPKMPYEMKEMALEAIVQLWRIPSFVTELYINY 542

Query: 141 DAD 133
           D D
Sbjct: 543 DCD 545


>AF068755-1|AAD15903.1| 1859|Homo sapiens sec7 domain family member
           protein.
          Length = 1859

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -2

Query: 306 VFYEIFQHFLLSMSIQYKK-----KINKCKMPKEFKEQVIKTVTRIEESHNVVGVLYLSK 142
           +F  + +H    M +  KK      +   KMP E KE  ++ + ++    + V  LY++ 
Sbjct: 483 LFESMREHLKFQMEMYIKKLMEIITVENPKMPYEMKEMALEAIVQLWRIPSFVTELYINY 542

Query: 141 DAD 133
           D D
Sbjct: 543 DCD 545


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,458,213
Number of Sequences: 237096
Number of extensions: 845954
Number of successful extensions: 1893
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1893
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2190862868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)