Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d22
         (361 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022985-8|AAB69966.1|  354|Caenorhabditis elegans Hypothetical ...    31   0.32 
U29154-4|AAA68420.2|  288|Caenorhabditis elegans Hypothetical pr...    29   0.74 
Z77653-3|CAB01126.1|  462|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z75551-5|CAA99935.1|  462|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    27   3.9  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    27   3.9  
Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical pr...    27   5.2  
AF100307-10|AAC68930.1|  295|Caenorhabditis elegans Hypothetical...    27   5.2  
AL132948-25|CAC51048.1|  438|Caenorhabditis elegans Hypothetical...    26   6.9  
AF101312-1|AAC69221.3|  813|Caenorhabditis elegans Hypothetical ...    26   9.1  
AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical ...    26   9.1  
AC006661-3|AAF39891.1|  141|Caenorhabditis elegans Temporarily a...    26   9.1  

>AF022985-8|AAB69966.1|  354|Caenorhabditis elegans Hypothetical
           protein T15B7.13 protein.
          Length = 354

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 172 VTLFNPSYCLDYLLLEFLWHFALVDFLLVLNRHT 273
           VT+F+  Y +DY +    W F  ++ LL  N  T
Sbjct: 283 VTIFSAVYMIDYYMFVKKWTFQFIEILLTFNAST 316


>U29154-4|AAA68420.2|  288|Caenorhabditis elegans Hypothetical
           protein T07F12.4 protein.
          Length = 288

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 65  QCFTGQTTFYRAAICPGLVYPVVSASFDRYRTP 163
           QC TG+  F   ++C   +Y V  A+FD Y  P
Sbjct: 214 QCVTGEVPFDECSLCKLFLY-VAGANFDAYDPP 245


>Z77653-3|CAB01126.1|  462|Caenorhabditis elegans Hypothetical
           protein T28H10.3 protein.
          Length = 462

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -3

Query: 359 HFVTHFLKKHIINFLSILYFMKYFNTFY*VC 267
           H   H  KK+ INF    Y MKY      +C
Sbjct: 398 HIAVHLFKKYCINFNEYEYAMKYVKVINNMC 428


>Z75551-5|CAA99935.1|  462|Caenorhabditis elegans Hypothetical
           protein T28H10.3 protein.
          Length = 462

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -3

Query: 359 HFVTHFLKKHIINFLSILYFMKYFNTFY*VC 267
           H   H  KK+ INF    Y MKY      +C
Sbjct: 398 HIAVHLFKKYCINFNEYEYAMKYVKVINNMC 428


>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 261  QYKKKINKCKMPKEFKEQVIKTVTRI 184
            + K+K N+ K PK F+E++ K +T +
Sbjct: 1288 ELKRKFNEFKRPKGFEEKLEKVITTL 1313


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 261  QYKKKINKCKMPKEFKEQVIKTVTRI 184
            + K+K N+ K PK F+E++ K +T +
Sbjct: 1288 ELKRKFNEFKRPKGFEEKLEKVITTL 1313


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -2

Query: 261  QYKKKINKCKMPKEFKEQVIKTVTRI 184
            + K+K N+ K PK F+E++ K +T +
Sbjct: 1288 ELKRKFNEFKRPKGFEEKLEKVITTL 1313


>Z70287-3|CAA94300.1| 1459|Caenorhabditis elegans Hypothetical
           protein R09E10.5 protein.
          Length = 1459

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 88  CCLAREALYILLLKTGNISFCLTIN 14
           CCL R   YI++++   ++ C  IN
Sbjct: 414 CCLDRTQTYIMMIEEREVATCQVIN 438


>AF100307-10|AAC68930.1|  295|Caenorhabditis elegans Hypothetical
           protein T12B5.4 protein.
          Length = 295

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 286 LKYFIKYKIDKKLIMCFFRKCVTKC 360
           +KY IKY +D K+ + F  + V  C
Sbjct: 268 MKYEIKYSVDNKIFVIFINRQVFCC 292


>AL132948-25|CAC51048.1|  438|Caenorhabditis elegans Hypothetical
           protein Y39B6A.33 protein.
          Length = 438

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 261 QYKKKINKCKMPKEFKEQVIKTVTRIEESHNVVGVLYLSKDAD 133
           Q KKK    K+ KE K + ++   + ++SHNV     L K+ D
Sbjct: 289 QKKKKAKAQKLDKEEKRR-LEEKAKEQDSHNVYRTKQLHKELD 330


>AF101312-1|AAC69221.3|  813|Caenorhabditis elegans Hypothetical
           protein F56E10.2 protein.
          Length = 813

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 240 KCKMPKEFKEQVIKTVTRIEE 178
           KCK+PK+  EQ++K +   EE
Sbjct: 460 KCKLPKDMIEQMLKFMPTKEE 480


>AF067621-1|AAC17540.2| 4368|Caenorhabditis elegans Hypothetical
            protein F55F10.1 protein.
          Length = 4368

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 303  FYEIFQHFLLSMSIQYKKKINKCKMPKEFKEQ 208
            F+ +F H +LSM++Q  +K     +PK  K++
Sbjct: 3575 FFSVFYHAMLSMTMQLYEKGYVNTIPKAEKQE 3606


>AC006661-3|AAF39891.1|  141|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 355 protein.
          Length = 141

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 261 QYKKKINKCKMPKEFKEQVIKTVTRIEESHNVVG-VLYLSKDAD 133
           + +K + K K  ++ ++ +   VTRIEE     G VL + KD +
Sbjct: 16  EQRKVVEKFKALRDQQQDIAAEVTRIEEERREFGRVLEVIKDLE 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,799,813
Number of Sequences: 27780
Number of extensions: 145763
Number of successful extensions: 399
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)