Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d22
         (361 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   2.5  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   4.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   5.9  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   5.9  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   5.9  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
 Frame = +1

Query: 46  FLIIIYTMLHGPDNILP-----GRHLPRPGL-SCSIGVF*QIQNSNN----VVTLFNPSY 195
           F+++I+T    P  ++P     GR +P   L SCS   F  + ++N     V T+F  SY
Sbjct: 165 FIVLIWTYTI-PWALMPVMGVWGRFVPEGFLTSCS---FDYLTDTNEIRIFVATIFTFSY 220

Query: 196 CLDYLLLEFLW 228
           C+  +L+ + +
Sbjct: 221 CIPMILIIYYY 231


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -2

Query: 306 VFYEIFQHFLLSMSIQYK 253
           VFYE+F++  L+M I++K
Sbjct: 48  VFYEVFRYLELAM-IRWK 64


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +1

Query: 280 KVLKYFIKYK 309
           K+L YF++YK
Sbjct: 426 KILSYFLRYK 435


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 252 KKINKCKMPKEFKEQVIKTVTRIEESHNVV 163
           K+ N       FKE +++ +T I    NV+
Sbjct: 68  KQFNIVDESGNFKENIVQELTSIYLDENVI 97


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -2

Query: 252 KKINKCKMPKEFKEQVIKTVTRIEESHNVV 163
           K+ N       FKE +++ +T I    NV+
Sbjct: 68  KQFNIVDESGNFKENIVQELTSIYLDENVI 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,583
Number of Sequences: 438
Number of extensions: 1837
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8432340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)