Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14d20
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 44 3e-05
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.14
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 30 0.25
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 29 0.58
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 29 0.76
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 29 0.76
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.0
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 28 1.3
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 1.8
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 1.8
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 27 2.3
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 27 3.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.1
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 27 3.1
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo... 26 4.1
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 26 5.4
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 5.4
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 26 5.4
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 7.1
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 25 9.4
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 43.6 bits (98), Expect = 3e-05
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Frame = -1
Query: 635 GELERVEXTRDTVRGRMVAEKIRTLEDL-PEQLTVDLIKEEMLSQPEAK-GFILVGFPRN 462
G++ R + R T G+ A+KI L + + +IK+E+L+ PE K GFIL GFPR
Sbjct: 35 GDMLRSQVARQTELGKE-AKKIMDQGGLVSDDIVTGMIKDEILNNPECKNGFILDGFPRT 93
Query: 461 ----SRMSDIFSRQVKWPEKVVALEVDNEVAAARLQNKLSELGRPES 333
+++ + V+ L+VD+E+ R+ +L G S
Sbjct: 94 VVQAEKLTALLDELKLDLNTVLELQVDDELLVRRITGRLVHPGSGRS 140
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.14
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -1
Query: 245 VDSTDNRTALASTLKEILSDTMEKNKRPVSPEPRPPSTVSAPAVLPPSAEVQPTP 81
+ S+ + ALA+ L ++ + PV P+ P +SAP PP V P P
Sbjct: 1664 IRSSKDAAALAAKLFGGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 30.3 bits (65), Expect = 0.25
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = -1
Query: 398 VDNEVAAARLQNKLSELGRPESEINAARQIIRDAAHKVKNV-QKRFARHVVTVDSTDNRT 222
+DN A + +++EL R +E+N R I + + + + K F + +V + +
Sbjct: 216 IDNVSANEMERREIAELARETTELNELRSSIGQSDNGFEKIFTKMFTKDIVRLREVPDAW 275
Query: 221 ALASTLKEI-LSDTMEKNKRPVSP 153
S KE+ S+ +E ++ SP
Sbjct: 276 TYRSPPKELSYSELLENAEKATSP 299
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 29.1 bits (62), Expect = 0.58
Identities = 22/85 (25%), Positives = 44/85 (51%)
Frame = -1
Query: 572 IRTLEDLPEQLTVDLIKEEMLSQPEAKGFILVGFPRNSRMSDIFSRQVKWPEKVVALEVD 393
+ TL LP+ + +D ++EMLS+ A+ G + ++ D +Q++ ++ L+
Sbjct: 143 LETLPALPDAIDMDEDEKEMLSEARARLANTQG--KKAKRKD-REKQLELTRRLSHLQKR 199
Query: 392 NEVAAARLQNKLSELGRPESEINAA 318
E+ AA + KL + E + NA+
Sbjct: 200 RELKAAGINIKLFRRKKNEMDYNAS 224
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 28.7 bits (61), Expect = 0.76
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = -1
Query: 275 QKRFARHVVTVDSTDNRTALASTLKEILSDTMEKNKRPVSPEPRPPSTVSAPAVL 111
+KR V+ S D T TL++++ K P PRPPS S PA+L
Sbjct: 24 EKRLIEQVIRETSKDPVTQQECTLEDLVPV-----KVPDFVRPRPPSATSLPALL 73
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 28.7 bits (61), Expect = 0.76
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -1
Query: 242 DSTDNRTALASTLKEIL-SDTMEKNKRPVSPE-PRPPSTVSAPAVLPPSAEVQPTPDTAD 69
DST N T L+ IL S +E + V+ P+PPS + A +PP A T + D
Sbjct: 346 DSTSNSTEYDDQLQSILRSLAIEGDDDEVAKVLPKPPSVPTIQAPIPPEAPRNLTNASVD 405
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 167 RPVSPEPRPPSTVSAPAVLPPSAEVQPTP 81
+P +P PPS S P+ +PP P P
Sbjct: 176 QPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.9 bits (59), Expect = 1.3
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 257 HVVTVDSTDNRTALASTLKEILSDTMEKNKRPVSPEPRPPSTVS 126
H T+D++ + T+LAST +S + + K + E P ST S
Sbjct: 284 HTSTLDASSSNTSLASTGPMTVSSSTVERKGKEASEVNPNSTSS 327
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -1
Query: 182 MEKNKRPVSPEPRPPSTVSAPAVLPPSAEVQPTP 81
M+ + P S EP S V+AP V P++ V P P
Sbjct: 137 MDASSAPASQEPSA-SGVNAPTVSAPNSMVSPPP 169
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.5 bits (58), Expect = 1.8
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Frame = -1
Query: 539 TVDLIKEEMLSQPEAKGFILVG--FPRNSRMSDIFSRQVKWPEKVVALEVDNEVAAARLQ 366
TV + +E P LV S + + S+ ++ EKV ALE D E+ +Q
Sbjct: 512 TVQVALDEYAQNPSTASETLVNKELANFSSIKEAVSKTLELREKVRALECDVEIQKQTVQ 571
Query: 365 NKLSELGRPESEINAARQIIRDAAHKVKNVQKRFARHVVTVDSTDNRTALASTLKEILS 189
++S NA ++ + ++KN++ + +S N L LKE+L+
Sbjct: 572 YQIS---------NAVKENSNTLSEQIKNLESELNSSKIKNESLLNERNL---LKEMLA 618
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 27.1 bits (57), Expect = 2.3
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
Frame = -1
Query: 401 EVDNEVAAARLQNKLSELGRPESEINAARQIIRDAAHKVKNVQKRFARHVVTV--DSTDN 228
E+ L N LS + P+S I+ +++R K+ + + F +V + + +
Sbjct: 378 EIGRRKLLKSLTNSLSTMALPDSLISLHIELLR----KLCSSENDFCSLLVEIITEVFEQ 433
Query: 227 RTALASTLKEILSDTMEKNKRPVSPEPRPPSTVSAPAVLPPSAEVQPTPDTAD 69
+ T ++ S+ E NK E S S LPP+ +P PD D
Sbjct: 434 GHSQNQTEEQGNSNAPELNKNDYEGEEITVSQKSPSPSLPPNELNEPEPDDMD 486
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 584 VAEKIRTLEDLPEQLTVDLIKEEMLSQPEA 495
+ E +R DLPE L + L KEE L P++
Sbjct: 781 IHEVLRLRFDLPENLKLQLNKEEALLPPKS 810
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 164 PVSPEPRPPSTVSAPAVLPPSAEVQPTPDTA 72
P P P +V+AP V PS+ + P P A
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPA 1185
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 161 VSPEPRPPSTVSAPAVLPPSAEVQPTP 81
+ P P+P +V+AP V PS V P P
Sbjct: 1091 IPPVPKP--SVAAPPVPKPSVAVPPVP 1115
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Frame = -1
Query: 212 STLKEILSDTMEKNKRPV--SPEPRPPSTV-----SAPAVLPPSAEVQPTP 81
S L +SDT+E+ ++ + SP P PP+ + AP +PP A + P
Sbjct: 711 SPLLPDVSDTVEEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGP 761
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -1
Query: 191 SDTMEKNKRPVSPEPRPPSTVSAPAVLPPSAEVQ 90
S+T++ + P+P +T SAP+ P V+
Sbjct: 277 SETVKSEQETAVEHPKPTATTSAPSASPTGVPVE 310
>SPAC1F7.08 |fio1||iron transport multicopper oxidase
Fio1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 622
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 278 VQKRFARHVVTVDSTDNRTALASTLKEILSDTMEKNKRP 162
V +R++ V +STD A+ + + E L DT+ N P
Sbjct: 257 VAQRYSVLVTAKNSTDRNYAITAYMDESLFDTIPDNYNP 295
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 230 NRTALASTLKEILSDTMEKNKRPVSPEPRPPSTVSAPAVLPP 105
N+T+ + +KE+ D ++ K P P S +S P + PP
Sbjct: 1011 NQTSDSVLVKELAKDLLKYLKVPQGPINEHKSPISKPHMPPP 1052
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -1
Query: 191 SDTMEKNKRPVSPEPRPPSTVSAPAVLPPSAEVQPTPDTADE 66
S N SP VS P ++ P+ +PTP +DE
Sbjct: 513 SQAQSPNLATPSPSFSSLPDVSLPPIVKPNLMSEPTPTNSDE 554
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -1
Query: 170 KRPVSPEPRPPSTVSAPAVLPPSAEVQPTPDT 75
K SP P PP++V V PS+ V + T
Sbjct: 83 KSAASPAPNPPASVPEKKVEAPSSTVAESTST 114
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = -1
Query: 401 EVDNEVAAARLQNKLSELGRPESEINAARQIIRDAAHKVKNVQKR 267
EVD E +LQN+L EL E++ A+ ++ + ++ ++++
Sbjct: 280 EVDYEYEIRQLQNRLDEL---SEELDVAQDLLTEKEDEIATLKRQ 321
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 25.0 bits (52), Expect = 9.4
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -1
Query: 269 RFARHVVTVDSTDNRTALASTLKEILSDTMEKNKRPVSPEPRPPS 135
+ A V+ S N+T+ ST+K I ++ E K P P P+
Sbjct: 300 KLADLVMRGSSHGNKTSQKSTIKNIENEDHENTKSPAVAIPIDPN 344
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,798
Number of Sequences: 5004
Number of extensions: 46024
Number of successful extensions: 207
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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