Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d18
         (756 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    31   0.029
EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calc...    26   1.4  
EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger pr...    25   3.3  
AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase ...    25   3.3  
AJ302655-1|CAC35520.1|  332|Anopheles gambiae gSG5 protein protein.    24   4.4  
AF444780-1|AAL37901.1| 1152|Anopheles gambiae Toll protein.            24   5.8  
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    23   7.7  
AY278447-1|AAP37004.1|  152|Anopheles gambiae microsomal glutath...    23   7.7  

>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 31.5 bits (68), Expect = 0.029
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = -1

Query: 708 YFINNTKPDIIE-QFSKMMTD-EEKSKIAKLLHDVAVKENQLPERCSGLVKDIREKFGKD 535
           Y +NN K  + +  F +   + EE +K  + L    V+  +   +CS  VKD++ K    
Sbjct: 722 YELNNLKQRLAQTSFQQTKEEIEELNKKIETLQKTIVEARETQTQCSAKVKDLQAKIADG 781

Query: 534 SNEDEDKVESVDE 496
               E +++S +E
Sbjct: 782 KGHRERELKSAEE 794


>EF990672-1|ABS30733.1|  466|Anopheles gambiae voltage-gated calcium
           channel beta subunitprotein.
          Length = 466

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -1

Query: 663 KMMTDEEKSKIAKLLHDVAVKENQLPERCSGLVK 562
           +M+  E+ S+    + DV + ENQL E C+ L +
Sbjct: 382 QMVAAEKLSQCPPEMFDVILDENQLEEACNHLAE 415


>EU068741-1|ABU40241.1|  993|Anopheles gambiae anion exchanger
           protein.
          Length = 993

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +1

Query: 169 YSIYQSDILDRACRNRFFSTLFYYITHFSIRQRGDQVCS 285
           Y +Y+SDI+D        +T+F Y    S       +CS
Sbjct: 432 YPMYKSDIMDGLNTEALAATIFMYFAALSTAITFGGLCS 470


>AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase
           protein.
          Length = 808

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 16/73 (21%), Positives = 40/73 (54%)
 Frame = -1

Query: 492 YENPYIVDKSQLEEIERKLEPLMSKNKRNSVASPNLIGHESDPKRPWRTNSNKEKLLRID 313
           ++  Y  +  + EE+ERK+  +  +  ++SVA P++   E  P+ P     N  +++ ++
Sbjct: 47  FQRKYTSEIRRCEEMERKIGYIRREIVKDSVAIPDM--PEVIPRTP-----NSREIIDLE 99

Query: 312 NELKRHLDKATDL 274
            +L++  ++  +L
Sbjct: 100 AQLEKTENEIVEL 112


>AJ302655-1|CAC35520.1|  332|Anopheles gambiae gSG5 protein protein.
          Length = 332

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -1

Query: 186 RLVDTVEEAKKTLFN---FQYRAVCNSTATAILREAHAPVDQNE 64
           R +D + E  +T F     +YR VC       ++  HA +DQ E
Sbjct: 159 RKMDELNEQIRTYFQNEFVEYRDVCLPDEDHCMKLLHAQIDQYE 202


>AF444780-1|AAL37901.1| 1152|Anopheles gambiae Toll protein.
          Length = 1152

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 534 NLYRTFPEYLLQDQNNVQVIDFL*QRHHVVVSLFSIFLHQSSSLKTVR 677
           N     PE LL+DQ  +QV+     +H+ +  L +  L  +  L T+R
Sbjct: 362 NRLHQLPEDLLRDQKALQVLQL---QHNQLTGLPAGLLRNTVELHTLR 406


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
           channel alpha1 subunit protein.
          Length = 1893

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 393 ETLHYFFYFLTSMVPVSFLFLQVVIY 470
           + L+YF YF TS+  +  L L++V Y
Sbjct: 887 QILNYFDYFFTSVFTIE-LLLKLVSY 911


>AY278447-1|AAP37004.1|  152|Anopheles gambiae microsomal
           glutathione transferase GSTMIC2protein.
          Length = 152

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = +3

Query: 408 FFYFLTSMVPVSFLFLQVVIY 470
           F  F+ +M+P +++ LQ ++Y
Sbjct: 129 FLAFVGAMMPTAYMTLQTILY 149


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 737,650
Number of Sequences: 2352
Number of extensions: 14292
Number of successful extensions: 26
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78170964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)