Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d17
         (730 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed...    29   8.6  
AF032921-1|AAC47810.1|  333|Drosophila melanogaster ribonuclease...    29   8.6  

>AF364550-2|AAK52058.1| 1065|Drosophila melanogaster RNA-directed
           DNA polymerase protein.
          Length = 1065

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 26/101 (25%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
 Frame = -1

Query: 613 KLEVE-LKDSEDHDKIAVAAVLQLSNADITNLLKYIKTRLFENSMLKDDLLKGKSMGVGF 437
           KL +E + + E+  K ++   L L + +I  +   I   L E +  + D L  +      
Sbjct: 103 KLRLEDINEEEETPKESLKENL-LDSPNIEYVNYVIDNELNETNEFRLDHLNDEERKALT 161

Query: 436 ALLRPFNDKQYRVMERIVISSPTKCLTTVKKRKDEKIFNAP 314
           ++L  F+D QY+  E +  +S TK + T K   ++ I+  P
Sbjct: 162 SVLYEFSDIQYKEGENLTFTSTTKHVITTK--HEDPIYRRP 200


>AF032921-1|AAC47810.1|  333|Drosophila melanogaster ribonuclease H1
           protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 346 KRKDEKIFNAPPIKRTKKILT*NYETRDFNTNSLCIKWNIVMVHHGV 206
           K++D K+ N  P+K        +   +D   N++ +KWN V  H G+
Sbjct: 268 KKRDWKLKNNQPVKNVVDFKELDKLLQD---NNITVKWNYVEAHKGI 311


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,646,902
Number of Sequences: 53049
Number of extensions: 626746
Number of successful extensions: 1374
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)