Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d17
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034393-16|CAA22331.2|  286|Caenorhabditis elegans Hypothetical...    28   7.9  
AF016686-5|ABO16458.1|  407|Caenorhabditis elegans Hypothetical ...    28   7.9  
AC006603-6|ABB51200.1|  534|Caenorhabditis elegans Hypothetical ...    28   7.9  

>AL034393-16|CAA22331.2|  286|Caenorhabditis elegans Hypothetical
           protein Y18D10A.21 protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 32/111 (28%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
 Frame = -1

Query: 616 VKLEVELKDSEDHDKIAVAAVLQLSNADI-TNLLKYIKTRLFENSMLKDDLLKGKSMGVG 440
           VKL VE +  +  D+  V AV  L   +   + ++  K + F   MLKD     KS   G
Sbjct: 176 VKLAVEHETDDIKDRKKVFAVKLLKTVEKKADEIREKKKKAFP-LMLKDYHPAPKSDYSG 234

Query: 439 FALLRPFNDKQYRVMERIVISSPTKCLTTVKKRKDEKIFNAPPIKRTKKIL 287
           ++ +  F       ++   + S  +    VK+   E I    PIK+ KKIL
Sbjct: 235 YSAMTVFEGVPSAKLDANNLKSVEQKTAAVKE--PEPISTVAPIKKKKKIL 283


>AF016686-5|ABO16458.1|  407|Caenorhabditis elegans Hypothetical
           protein R07C3.7 protein.
          Length = 407

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 23/74 (31%), Positives = 34/74 (45%)
 Frame = -1

Query: 619 NVKLEVELKDSEDHDKIAVAAVLQLSNADITNLLKYIKTRLFENSMLKDDLLKGKSMGVG 440
           N+K++  L  SE+ DKI  A    LS+ +    L   KT  F+N M++   L     G G
Sbjct: 236 NLKVQHLLIPSEELDKILEAIRPNLSSLESLESLTIEKTYEFQNPMVQAIPLIILKYGYG 295

Query: 439 FALLRPFNDKQYRV 398
           +  L   N    R+
Sbjct: 296 YHTLLRINTGYPRI 309


>AC006603-6|ABB51200.1|  534|Caenorhabditis elegans Hypothetical
           protein B0524.1 protein.
          Length = 534

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
 Frame = -1

Query: 367 KCLTTVKKRKDE--KIFNAPP-----IKRTKKILT*NYETRDFNTNSLCI 239
           K   T KKR+DE  +IF  PP     IK   ++   N E RD+ +++LC+
Sbjct: 40  KSKKTAKKRRDEEFRIFFPPPRVNPPIKTPFRLHNTNCEHRDWISDNLCL 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,871,951
Number of Sequences: 27780
Number of extensions: 321127
Number of successful extensions: 719
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)