Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14d16
(460 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces... 75 7e-15
SPBC336.08 |spc24||spindle pole body protein Spc24|Schizosacchar... 29 0.45
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 28 0.60
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 28 0.79
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 27 1.4
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po... 27 1.8
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 27 1.8
SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces... 27 1.8
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 26 2.4
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 26 3.2
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo... 25 4.2
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch... 25 4.2
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.6
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 5.6
SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit Gsa1... 25 5.6
SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.6
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 25 7.3
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces... 24 9.7
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 24 9.7
>SPBC651.05c |dot2||EAP30 family protein Dot2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 252
Score = 74.5 bits (175), Expect = 7e-15
Identities = 36/101 (35%), Positives = 60/101 (59%), Gaps = 2/101 (1%)
Frame = -1
Query: 322 MRRRAGVGAIQKHRLEQEKYKEKGTEIQENQFQQMSKQLEVFRENLEDFASKHKSEIKKN 143
MR+R G+GA+ ++ Y+E G E+ E Q +++ QL F+E L+ FA +H +EIK+N
Sbjct: 1 MRKRIGIGALNDDEYLKQ-YEEVGNELIEQQSDEIASQLSTFQEALKTFAREHATEIKQN 59
Query: 142 AQFRRQFQEMCAAIGVDPLASG--KGFWSVLDYTSCRYHLS 26
+QFR F ++ IG+DP SG + W+ + Y ++
Sbjct: 60 SQFRNTFVKLALKIGLDPFVSGSDESAWAAVGMNEFYYQVA 100
>SPBC336.08 |spc24||spindle pole body protein
Spc24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 198
Score = 28.7 bits (61), Expect = 0.45
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Frame = -1
Query: 304 VGAIQKHRLEQEKYKEKGTEIQENQFQQMSKQLEVFRENLEDF-----ASKHKSEI--KK 146
+ IQ R + + ++EK E + +F+ +S++LE+ + +E +S+H EI ++
Sbjct: 25 ISNIQDIRAQIQSFREKELEGSQTKFKVLSRKLEISTQAMESLKQTAESSQHAEEILSRE 84
Query: 145 NAQFR 131
+FR
Sbjct: 85 KEKFR 89
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 28.3 bits (60), Expect = 0.60
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 277 EQEKYKEKGTEIQENQFQQMSKQLEVFRENLEDFASKHKSE 155
E + K+K + +QE + Q K+LE +EN + ++ + E
Sbjct: 157 ESQTDKKKTSTVQEEELQNAGKKLETVQENPQAYSKVTQQE 197
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 27.9 bits (59), Expect = 0.79
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -1
Query: 259 EKGTEIQENQFQQMSKQLEVFRENLEDFASKHKSEIKKNAQFRRQFQE 116
E+ E +NQ QMSKQL ++LE + EI+ + F +E
Sbjct: 189 ERERETFQNQVSQMSKQL----DSLEKLCERKDEEIRSSQAFNMTLRE 232
Score = 25.4 bits (53), Expect = 4.2
Identities = 16/73 (21%), Positives = 36/73 (49%)
Frame = -1
Query: 331 QPKMRRRAGVGAIQKHRLEQEKYKEKGTEIQENQFQQMSKQLEVFRENLEDFASKHKSEI 152
+ K++R A + ++ K E+ E+Q++QF++ LE +E+L+ + E
Sbjct: 77 ETKLKRLDEKQATPELQVSDSKEMEEQLELQKSQFEKRISILEKEKEDLQRKMEELTVES 136
Query: 151 KKNAQFRRQFQEM 113
+ + RQ + +
Sbjct: 137 MEVVRLTRQVETL 149
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 27.1 bits (57), Expect = 1.4
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = -1
Query: 298 AIQKHRLEQEKYKEKGTEIQE--NQFQQMSKQLEVFRENLEDFASKHKSEIKKNAQFRRQ 125
A+Q +L + + +EK EI E N+ +++ ++ E+ ++ E+ + E K+ A RQ
Sbjct: 22 AVQIEQLRKAQIREKAREITEERNRQRKLQRERELRQKYEEEQRRQQAMEAKRIAASTRQ 81
Query: 124 FQE 116
E
Sbjct: 82 TSE 84
>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 336
Score = 26.6 bits (56), Expect = 1.8
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -1
Query: 295 IQKHRLEQEKYKEKGTEIQEN 233
++K+R E+EK KE G ++ +N
Sbjct: 307 LEKYRQEEEKRKENGDDLSDN 327
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 26.6 bits (56), Expect = 1.8
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = -1
Query: 295 IQKHRLEQEKYKEKGTEIQENQFQQMSKQLEVFRENLEDFASKHKSEIKKNAQFRRQFQE 116
IQ + ++ +EKG E+Q+N +E ENL S ++ ++K Q +FQ
Sbjct: 27 IQLEKFVSQQIEEKGRELQQNVCFNYQSFIEA-SENL----SNIRNNLEKVLQNSYEFQS 81
Query: 115 MCAAIGVD 92
M + VD
Sbjct: 82 MVSLPKVD 89
>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 61
Score = 26.6 bits (56), Expect = 1.8
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 346 HFNTIQPKMRRRAGVGAIQKHRLEQEKYKE 257
H N Q K R G+ QKHR + KY++
Sbjct: 7 HTNHNQNKKAHRNGIKRPQKHRYDSLKYRD 36
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 26.2 bits (55), Expect = 2.4
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -1
Query: 298 AIQKHRLEQEKYKEKGTEIQENQFQQMSKQLEVFRENLEDFASKHKSEIKKNAQ 137
A+ HR+ + + +E TEI +N + QLE + LE+ + S +K+ Q
Sbjct: 493 ALSNHRVTRSEMEE-ATEILKNNSADLKAQLEKQPQELENRLLQEISILKQRNQ 545
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 3.2
Identities = 10/41 (24%), Positives = 24/41 (58%)
Frame = -1
Query: 262 KEKGTEIQENQFQQMSKQLEVFRENLEDFASKHKSEIKKNA 140
+EK + +E + ++++ Q+E E ++ FA ++ K+A
Sbjct: 13 REKKRKEEEEEIEELNSQIEALSETVDHFAELPLTQPTKSA 53
>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
Srk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 4.2
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -1
Query: 286 HRLEQEKYKEKGTEIQENQFQQMSKQLEVFRENLEDFASKHKS 158
HR+EQEK +++G + M ++ EN +D+ KS
Sbjct: 480 HRMEQEKIRKRGQRGNQGIMNFMGDMDDLMEEN-DDYDDGTKS 521
>SPCC4F11.04c |||mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 345
Score = 25.4 bits (53), Expect = 4.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 215 RHLLELVFLYFCALFFIFLLFQSVFLDCTY 304
RHL ++ FC F + +F S LD Y
Sbjct: 294 RHLAYVIVAGFCLYFILSYMFFSKLLDSRY 323
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 5.6
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +2
Query: 155 FTLVF*CKIFQIFPKHFQLFRHLLELVFLYFCALFFIFLLF 277
F+ F + QIF +F F L L F + C F+ LF
Sbjct: 131 FSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSFLF 171
>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 283
Score = 25.0 bits (52), Expect = 5.6
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 220 SAGIGFLVFLCPFLYISLVPIC 285
S I + FLC F Y+S + +C
Sbjct: 6 SFAISAIFFLCSFSYVSSIKLC 27
>SPAC3F10.04 |gsa1|gsh2|glutathione synthetase large subunit
Gsa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 5.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 271 EKYKEKGTEIQENQFQQMSKQLEVFREN 188
+K++E ++ENQFQ +S L VFR +
Sbjct: 105 QKHREAVAHLKENQFQPLS--LGVFRSD 130
>SPBC405.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 143
Score = 25.0 bits (52), Expect = 5.6
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = -1
Query: 244 IQENQFQQMSKQLEVFRENLEDFASKHKSEIKKNAQFRRQ 125
I +F+Q+ + ++++ NL+ K + +KN +Q
Sbjct: 65 INLEEFRQLKRNCDLYQRNLQKLQLLFKQQSQKNTLLEKQ 104
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 24.6 bits (51), Expect = 7.3
Identities = 9/35 (25%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -2
Query: 255 RAQKYK-KTNSSRCRNNWKCLGKIWKILHQNTRVK 154
+A+ Y+ K +RC +W+ + ++ + LH++ K
Sbjct: 5 KAKTYELKLEQTRCNGDWQAIPEVARKLHKHNSSK 39
>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 578
Score = 24.2 bits (50), Expect = 9.7
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = -1
Query: 277 EQEKYKEKGTEIQENQFQQMSKQLEVFRENLEDFASKHKSEIKK 146
E+E+ EI +F + KQ+ + ++ LE +K + ++K
Sbjct: 384 EEEEALMSEEEINGAKFAAVDKQISMLQDTLEAMKAKKMNRMRK 427
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 24.2 bits (50), Expect = 9.7
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -1
Query: 271 EKYKEKGTEIQENQFQQMSKQLEV-FR-ENLEDFA 173
E YK K F+Q+ LEV FR E L FA
Sbjct: 97 ESYKPKSVNTSAKSFRQLVNTLEVAFRKEQLRKFA 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,107
Number of Sequences: 5004
Number of extensions: 44280
Number of successful extensions: 182
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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