Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d15
         (599 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    27   1.6  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.8  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    27   2.8  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    26   3.7  
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz...    26   4.8  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    26   4.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   6.4  
SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr ...    25   6.4  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.5  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   8.5  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      25   8.5  
SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit Nse5|Schizosacc...    25   8.5  

>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/37 (32%), Positives = 15/37 (40%)
 Frame = +3

Query: 39  KPGTVSSRTWDRYCLHCCSSLRSTDTLSPHGRCCKRC 149
           K G+  S    R  +H C + R       HGR C  C
Sbjct: 6   KSGSKKSGQTSRRAIHSCLACRRKKLKCDHGRPCSNC 42


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 285 ETAIPNPVAQNFFCRKIVQTIYHPHHDSE 199
           +  +PN   Q F    +V TIY P   SE
Sbjct: 137 QLVVPNNFQQMFIHHPVVDTIYSPEESSE 165


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 269 LGIAVSQWTTGIMIPRISGSISLTSRQAELLALLQLKH 382
           L  +++ WT+GI+  RI+  I ++S  +    LL+L +
Sbjct: 407 LEASINDWTSGILKNRITKGIKISSINSGATMLLKLHY 444


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 52  YRPGRGIGTVCTVAVVCEALTHYLRMVAVVNGVA 153
           YR    +GT+CTV  +  A +      ++V+G+A
Sbjct: 660 YRALMALGTLCTVPDIALAASQIYHAQSIVHGIA 693


>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 218

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 117 LSPHGRCCKRCSTPYH 164
           L P G CCK CS+ +H
Sbjct: 146 LYPKGGCCKFCSSVHH 161


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = -3

Query: 516 IQNDCRXXXX*LIFFL--FPVK-MFQKSRLSIAFLTLISL-FHKSTA 388
           ++NDC+     L+FFL   P K +FQK    +A +T  SL   K TA
Sbjct: 278 LENDCQFQLSNLVFFLPKSPDKEIFQKILQCLAVVTASSLELRKLTA 324


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 251 FSAGRSSKPFIILITTPRSA*PGTAPGSPVIRSATPFTTAT 129
           +S+GR+  P I    TP+ A P  AP  P   +  P +T T
Sbjct: 213 YSSGRAVSPEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNT 253


>SPCC576.14 |||diphthine synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 148 VALLITGDPGAVPGHADLGVVMR 216
           VA+L+ GDP     HADL +  R
Sbjct: 77  VAMLVVGDPMGATTHADLVIRAR 99


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 462  LEIKRKSINFNYFYNRFECYLRLNIRMLR 548
            LEI  + I  NY Y R E YL + I++ +
Sbjct: 932  LEILAQKILMNYDYERDEVYLMIFIKIFQ 960


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/41 (21%), Positives = 23/41 (56%)
 Frame = -3

Query: 258 QNFFCRKIVQTIYHPHHDSEIRVTRNCAWVPGDKECYTVYN 136
           +N+   + +Q ++  +H  E++   NC +   D++  ++YN
Sbjct: 204 KNWSDEQFLQYVWSDNHRDEMKTLYNCLYELIDRDKKSIYN 244


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = -1

Query: 188 PGTAPGSPVIRSATPFTTATMRR*CVSASQTTATVQTVPIPRP 60
           P  AP SPV  + +P       R    A   T      P+P+P
Sbjct: 18  PRAAPSSPVSTNGSPLNNLVRSRLSDGALNFTGGRIATPLPQP 60


>SPBC651.10 |nse5||Smc5-6 complex non-SMC subunit
           Nse5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 9/38 (23%), Positives = 18/38 (47%)
 Frame = -3

Query: 282 TAIPNPVAQNFFCRKIVQTIYHPHHDSEIRVTRNCAWV 169
           T+IP P     + R  +  + HP + +   +  +C W+
Sbjct: 32  TSIPIPAC---YIRMCITLLVHPEYPTSSNIQESCNWI 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,247,565
Number of Sequences: 5004
Number of extensions: 42843
Number of successful extensions: 123
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)