Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14d15
(599 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40572-1|AAC50449.1| 540|Homo sapiens beta2-syntrophin protein. 31 4.1
BC048215-1|AAH48215.1| 540|Homo sapiens syntrophin, beta 2 (dys... 31 4.1
AF243385-1|AAK15149.1| 267|Homo sapiens beta-2 syntrophin protein. 31 4.1
X74955-1|CAA52910.1| 622|Homo sapiens mucin protein. 30 5.4
X74370-1|CAA52408.1| 543|Homo sapiens mucin protein. 30 5.4
M19285-1|AAA35880.1| 536|Homo sapiens protein ( Human glucocere... 30 5.4
M16328-1|AAA35873.1| 516|Homo sapiens protein ( Human glucocere... 30 5.4
K02920-1|AAA35877.1| 516|Homo sapiens lysosomal glucocerebrosid... 30 5.4
J03059-1|AAC63056.1| 536|Homo sapiens glucocerebrosidase protein. 30 5.4
D13286-1|BAA02545.1| 536|Homo sapiens glucocerebrosidase protein. 30 5.4
BC042172-1|AAH42172.1| 184|Homo sapiens ZMYM6 protein protein. 30 5.4
BC003356-1|AAH03356.1| 536|Homo sapiens glucosidase, beta; acid... 30 5.4
AL713999-21|CAI95090.1| 536|Homo sapiens glucosidase, beta; aci... 30 5.4
AF023268-4|AAC51820.1| 536|Homo sapiens glucocerebrosidase prot... 30 5.4
Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein. 30 7.1
X58288-1|CAA41226.1| 1452|Homo sapiens protein-tyrosine phosphat... 30 7.1
BC051651-1|AAH51651.1| 1390|Homo sapiens PTPRM protein protein. 30 7.1
BC040543-1|AAH40543.1| 279|Homo sapiens PTPRM protein protein. 30 7.1
AF253321-1|AAF64523.1| 716|Homo sapiens cervical mucin MUC5B pr... 30 7.1
BC063013-1|AAH63013.1| 134|Homo sapiens retinol binding protein... 29 9.4
BC033883-1|AAH33883.1| 225|Homo sapiens RBP7 protein protein. 29 9.4
AY145438-1|AAN61071.1| 134|Homo sapiens putative cellular retin... 29 9.4
AL603962-1|CAI16811.1| 134|Homo sapiens retinol binding protein... 29 9.4
AL590639-2|CAI14685.1| 134|Homo sapiens retinol binding protein... 29 9.4
AL590639-1|CAI14684.1| 181|Homo sapiens retinol binding protein... 29 9.4
AF399927-1|AAK85409.1| 134|Homo sapiens retinoid binding protei... 29 9.4
>U40572-1|AAC50449.1| 540|Homo sapiens beta2-syntrophin protein.
Length = 540
Score = 30.7 bits (66), Expect = 4.1
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 58 PGRGIGTVCTVAVVCEALTH--YLRMVAVVNGVALLITGDPGAVPGHADLGVVMRMINGL 231
P + T T A + E L ++R+VA ++G +L +TGD A LG NGL
Sbjct: 14 PAMAVWTRATKAGLVELLLRERWVRVVAELSGESLSLTGDAAAAELEPALGPAAAAFNGL 73
>BC048215-1|AAH48215.1| 540|Homo sapiens syntrophin, beta 2
(dystrophin-associated protein A1, 59kDa, basic
component 2) protein.
Length = 540
Score = 30.7 bits (66), Expect = 4.1
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 58 PGRGIGTVCTVAVVCEALTH--YLRMVAVVNGVALLITGDPGAVPGHADLGVVMRMINGL 231
P + T T A + E L ++R+VA ++G +L +TGD A LG NGL
Sbjct: 14 PAMAVWTRATKAGLVELLLRERWVRVVAELSGESLSLTGDAAAAELEPALGPAAAAFNGL 73
>AF243385-1|AAK15149.1| 267|Homo sapiens beta-2 syntrophin protein.
Length = 267
Score = 30.7 bits (66), Expect = 4.1
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 58 PGRGIGTVCTVAVVCEALTH--YLRMVAVVNGVALLITGDPGAVPGHADLGVVMRMINGL 231
P + T T A + E L ++R+VA ++G +L +TGD A LG NGL
Sbjct: 14 PAMAVWTRATKAGLVELLLRERWVRVVAELSGESLSLTGDAAAAELEPALGPAAAAFNGL 73
>X74955-1|CAA52910.1| 622|Homo sapiens mucin protein.
Length = 622
Score = 30.3 bits (65), Expect = 5.4
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -1
Query: 209 TTPRSA*PGTAPGSPVIRSATPFTTATMRR*CVSASQTTATVQTVPI 69
TT S+ PGT P PV+ S AT + S+S TAT T+P+
Sbjct: 524 TTNPSSTPGTTPIPPVLTSTATTPAATSSKATSSSSPRTAT--TLPV 568
Score = 29.9 bits (64), Expect = 7.1
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = -1
Query: 206 TPRSA*PGTAPGSPVIRSATPFTTATMRR*CVSASQTTATVQTVPI 69
TP S PGTAP V+ S TAT + S+S TAT T+P+
Sbjct: 99 TPSST-PGTAPPPKVLTSPATTPTATSSKATSSSSPRTAT--TLPV 141
>X74370-1|CAA52408.1| 543|Homo sapiens mucin protein.
Length = 543
Score = 30.3 bits (65), Expect = 5.4
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -1
Query: 209 TTPRSA*PGTAPGSPVIRSATPFTTATMRR*CVSASQTTATVQTVPI 69
TT S+ PGT P PV+ S AT + S+S TAT T+P+
Sbjct: 472 TTNPSSTPGTTPIPPVLTSTATTPAATSSKATSSSSPRTAT--TLPV 516
>M19285-1|AAA35880.1| 536|Homo sapiens protein ( Human
glucocerebrosidase mRNA, complete cds. ).
Length = 536
Score = 30.3 bits (65), Expect = 5.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 177 AWVPGDKECYTVYNSDHAEIVCQCFADYCNSAD-STDPTSGT 55
+W G + C + ++ +VC C A YC+S D T P GT
Sbjct: 35 SWASGARPCIPK-SFGYSSVVCVCNATYCDSFDPPTFPALGT 75
>M16328-1|AAA35873.1| 516|Homo sapiens protein ( Human
glucocerebrosidase mRNA, complete cds. ).
Length = 516
Score = 30.3 bits (65), Expect = 5.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 177 AWVPGDKECYTVYNSDHAEIVCQCFADYCNSAD-STDPTSGT 55
+W G + C + ++ +VC C A YC+S D T P GT
Sbjct: 15 SWASGARPCIPK-SFGYSSVVCVCNATYCDSFDPPTFPALGT 55
>K02920-1|AAA35877.1| 516|Homo sapiens lysosomal glucocerebrosidase
precursor protein.
Length = 516
Score = 30.3 bits (65), Expect = 5.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 177 AWVPGDKECYTVYNSDHAEIVCQCFADYCNSAD-STDPTSGT 55
+W G + C + ++ +VC C A YC+S D T P GT
Sbjct: 15 SWASGARPCIPK-SFGYSSVVCVCNATYCDSFDPPTFPALGT 55
>J03059-1|AAC63056.1| 536|Homo sapiens glucocerebrosidase protein.
Length = 536
Score = 30.3 bits (65), Expect = 5.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 177 AWVPGDKECYTVYNSDHAEIVCQCFADYCNSAD-STDPTSGT 55
+W G + C + ++ +VC C A YC+S D T P GT
Sbjct: 35 SWASGARPCIPK-SFGYSSVVCVCNATYCDSFDPPTFPALGT 75
>D13286-1|BAA02545.1| 536|Homo sapiens glucocerebrosidase protein.
Length = 536
Score = 30.3 bits (65), Expect = 5.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 177 AWVPGDKECYTVYNSDHAEIVCQCFADYCNSAD-STDPTSGT 55
+W G + C + ++ +VC C A YC+S D T P GT
Sbjct: 35 SWASGARPCIPK-SFGYSSVVCVCNATYCDSFDPPTFPALGT 75
>BC042172-1|AAH42172.1| 184|Homo sapiens ZMYM6 protein protein.
Length = 184
Score = 30.3 bits (65), Expect = 5.4
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = -1
Query: 185 GTAPGSPVIRSATPFTTATMRR*CVSASQTTATVQTVPIPRPGRYCSW 42
G A P R P T MRR S A + +P PGR +W
Sbjct: 85 GLARRPPATRPGPPTTCPPMRRWSSPRSSACAAAASYAVPGPGRLPAW 132
>BC003356-1|AAH03356.1| 536|Homo sapiens glucosidase, beta; acid
(includes glucosylceramidase) protein.
Length = 536
Score = 30.3 bits (65), Expect = 5.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 177 AWVPGDKECYTVYNSDHAEIVCQCFADYCNSAD-STDPTSGT 55
+W G + C + ++ +VC C A YC+S D T P GT
Sbjct: 35 SWASGARPCIPK-SFGYSSVVCVCNATYCDSFDPPTFPALGT 75
>AL713999-21|CAI95090.1| 536|Homo sapiens glucosidase, beta; acid
(includes glucosylceramidase) protein.
Length = 536
Score = 30.3 bits (65), Expect = 5.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 177 AWVPGDKECYTVYNSDHAEIVCQCFADYCNSAD-STDPTSGT 55
+W G + C + ++ +VC C A YC+S D T P GT
Sbjct: 35 SWASGARPCIPK-SFGYSSVVCVCNATYCDSFDPPTFPALGT 75
>AF023268-4|AAC51820.1| 536|Homo sapiens glucocerebrosidase
protein.
Length = 536
Score = 30.3 bits (65), Expect = 5.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = -3
Query: 177 AWVPGDKECYTVYNSDHAEIVCQCFADYCNSAD-STDPTSGT 55
+W G + C + ++ +VC C A YC+S D T P GT
Sbjct: 35 SWASGARPCIPK-SFGYSSVVCVCNATYCDSFDPPTFPALGT 75
>Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.
Length = 3570
Score = 29.9 bits (64), Expect = 7.1
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = -1
Query: 206 TPRSA*PGTAPGSPVIRSATPFTTATMRR*CVSASQTTATVQTVPI 69
TP S PGTAP V+ S TAT + S+S TAT T+P+
Sbjct: 2885 TPSST-PGTAPPPKVLTSPATTPTATSSKATSSSSPRTAT--TLPV 2927
Score = 29.9 bits (64), Expect = 7.1
Identities = 19/47 (40%), Positives = 25/47 (53%)
Frame = -1
Query: 209 TTPRSA*PGTAPGSPVIRSATPFTTATMRR*CVSASQTTATVQTVPI 69
TT S+ PGT P PV+ S AT + S+S TAT T+P+
Sbjct: 3309 TTNPSSTPGTTPIPPVLTSMATTPAATSSKATSSSSPRTAT--TLPV 3353
>X58288-1|CAA41226.1| 1452|Homo sapiens protein-tyrosine phosphatase
protein.
Length = 1452
Score = 29.9 bits (64), Expect = 7.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 73 GTVCTVAVVCEALTHYLRMVAVVNGVALLITGDPGAV 183
GT C +++VCE L H R V V + V L P V
Sbjct: 1397 GTFCAISIVCEMLRHQ-RTVDVFHAVKTLRNNKPNMV 1432
>BC051651-1|AAH51651.1| 1390|Homo sapiens PTPRM protein protein.
Length = 1390
Score = 29.9 bits (64), Expect = 7.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 73 GTVCTVAVVCEALTHYLRMVAVVNGVALLITGDPGAV 183
GT C +++VCE L H R V V + V L P V
Sbjct: 1335 GTFCAISIVCEMLRHQ-RTVDVFHAVKTLRNNKPNMV 1370
>BC040543-1|AAH40543.1| 279|Homo sapiens PTPRM protein protein.
Length = 279
Score = 29.9 bits (64), Expect = 7.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 73 GTVCTVAVVCEALTHYLRMVAVVNGVALLITGDPGAV 183
GT C +++VCE L H R V V + V L P V
Sbjct: 224 GTFCAISIVCEMLRHQ-RTVDVFHAVKTLRNNKPNMV 259
>AF253321-1|AAF64523.1| 716|Homo sapiens cervical mucin MUC5B
protein.
Length = 716
Score = 29.9 bits (64), Expect = 7.1
Identities = 20/46 (43%), Positives = 25/46 (54%)
Frame = -1
Query: 206 TPRSA*PGTAPGSPVIRSATPFTTATMRR*CVSASQTTATVQTVPI 69
TP S PGTAP V+ S TAT + S+S TAT T+P+
Sbjct: 359 TPSST-PGTAPPPKVLTSPATTPTATSSKATSSSSPRTAT--TLPV 401
>BC063013-1|AAH63013.1| 134|Homo sapiens retinol binding protein 7,
cellular protein.
Length = 134
Score = 29.5 bits (63), Expect = 9.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 18 RNIGKLLKPGTVSSRTWDRYCLHCCSSLRS 107
R I KLLKP V + D + +H SSLR+
Sbjct: 31 RKIAKLLKPQKVIEQNGDSFTIHTNSSLRN 60
>BC033883-1|AAH33883.1| 225|Homo sapiens RBP7 protein protein.
Length = 225
Score = 29.5 bits (63), Expect = 9.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 18 RNIGKLLKPGTVSSRTWDRYCLHCCSSLRS 107
R I KLLKP V + D + +H SSLR+
Sbjct: 122 RKIAKLLKPQKVIEQNGDSFTIHTNSSLRN 151
>AY145438-1|AAN61071.1| 134|Homo sapiens putative cellular
retinol-binding protein CRBP IV protein.
Length = 134
Score = 29.5 bits (63), Expect = 9.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 18 RNIGKLLKPGTVSSRTWDRYCLHCCSSLRS 107
R I KLLKP V + D + +H SSLR+
Sbjct: 31 RKIAKLLKPQKVIEQNGDSFTIHTNSSLRN 60
>AL603962-1|CAI16811.1| 134|Homo sapiens retinol binding protein 7,
cellular protein.
Length = 134
Score = 29.5 bits (63), Expect = 9.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 18 RNIGKLLKPGTVSSRTWDRYCLHCCSSLRS 107
R I KLLKP V + D + +H SSLR+
Sbjct: 31 RKIAKLLKPQKVIEQNGDSFTIHTNSSLRN 60
>AL590639-2|CAI14685.1| 134|Homo sapiens retinol binding protein 7,
cellular protein.
Length = 134
Score = 29.5 bits (63), Expect = 9.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 18 RNIGKLLKPGTVSSRTWDRYCLHCCSSLRS 107
R I KLLKP V + D + +H SSLR+
Sbjct: 31 RKIAKLLKPQKVIEQNGDSFTIHTNSSLRN 60
>AL590639-1|CAI14684.1| 181|Homo sapiens retinol binding protein 7,
cellular protein.
Length = 181
Score = 29.5 bits (63), Expect = 9.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 18 RNIGKLLKPGTVSSRTWDRYCLHCCSSLRS 107
R I KLLKP V + D + +H SSLR+
Sbjct: 78 RKIAKLLKPQKVIEQNGDSFTIHTNSSLRN 107
>AF399927-1|AAK85409.1| 134|Homo sapiens retinoid binding protein 7
protein.
Length = 134
Score = 29.5 bits (63), Expect = 9.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 18 RNIGKLLKPGTVSSRTWDRYCLHCCSSLRS 107
R I KLLKP V + D + +H SSLR+
Sbjct: 31 RKIAKLLKPQKVIEQNGDSFTIHTNSSLRN 60
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,008,177
Number of Sequences: 237096
Number of extensions: 1697138
Number of successful extensions: 3449
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 3279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3444
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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