Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14d15
(599 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 31 0.63
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 31 0.63
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 31 0.63
Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical pr... 29 2.5
AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein. 29 2.5
Z74027-2|CAA98420.1| 210|Caenorhabditis elegans Hypothetical pr... 29 3.3
AF324058-1|AAK01419.1| 210|Caenorhabditis elegans Ly-6-related ... 29 3.3
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical pr... 28 4.4
X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase... 28 4.4
D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosi... 28 4.4
Z81074-11|CAB03045.2| 562|Caenorhabditis elegans Hypothetical p... 28 5.9
U64849-5|AAC48055.1| 174|Caenorhabditis elegans Saposin-like pr... 28 5.9
Z81136-3|CAD27610.1| 196|Caenorhabditis elegans Hypothetical pr... 27 7.7
U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein. 27 7.7
U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein. 27 7.7
AF324055-1|AAK01416.1| 151|Caenorhabditis elegans Ly-6-related ... 27 7.7
AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell... 27 7.7
AC024204-7|AAM97982.1| 614|Caenorhabditis elegans Abnormal cell... 27 7.7
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 31.1 bits (67), Expect = 0.63
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 188 PGTAPGSPVIRSATPFTTATMRR*CVSASQTTATVQTVPI 69
P TAP P + + TP TT + + + TT T T P+
Sbjct: 672 PTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPV 711
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 31.1 bits (67), Expect = 0.63
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 188 PGTAPGSPVIRSATPFTTATMRR*CVSASQTTATVQTVPI 69
P TAP P + + TP TT + + + TT T T P+
Sbjct: 728 PTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPV 767
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 31.1 bits (67), Expect = 0.63
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -1
Query: 188 PGTAPGSPVIRSATPFTTATMRR*CVSASQTTATVQTVPI 69
P TAP P + + TP TT + + + TT T T P+
Sbjct: 551 PTTAPTVPPVTTTTPTTTTSTTTTTTTTTTTTQTTPTTPV 590
>Z69662-9|CAA93507.2| 1782|Caenorhabditis elegans Hypothetical protein
C10C5.6b protein.
Length = 1782
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 12 NDRNIGKLLKPGTVSSRTWDRYCLHCC 92
N +N GKLL GT S R WD +C C
Sbjct: 1494 NQQN-GKLLCTGTRSVRIWDAHCEKVC 1519
>Z69662-8|CAA93506.2| 1776|Caenorhabditis elegans Hypothetical protein
C10C5.6a protein.
Length = 1776
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 12 NDRNIGKLLKPGTVSSRTWDRYCLHCC 92
N +N GKLL GT S R WD +C C
Sbjct: 1488 NQQN-GKLLCTGTRSVRIWDAHCEKVC 1513
>Z68214-8|CAA92449.2| 1782|Caenorhabditis elegans Hypothetical protein
C10C5.6b protein.
Length = 1782
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 12 NDRNIGKLLKPGTVSSRTWDRYCLHCC 92
N +N GKLL GT S R WD +C C
Sbjct: 1494 NQQN-GKLLCTGTRSVRIWDAHCEKVC 1519
>Z68214-7|CAA92448.2| 1776|Caenorhabditis elegans Hypothetical protein
C10C5.6a protein.
Length = 1776
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 12 NDRNIGKLLKPGTVSSRTWDRYCLHCC 92
N +N GKLL GT S R WD +C C
Sbjct: 1488 NQQN-GKLLCTGTRSVRIWDAHCEKVC 1513
>AY396716-1|AAR29589.1| 1800|Caenorhabditis elegans DAF-15 protein.
Length = 1800
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +3
Query: 12 NDRNIGKLLKPGTVSSRTWDRYCLHCC 92
N +N GKLL GT S R WD +C C
Sbjct: 1512 NQQN-GKLLCTGTRSVRIWDAHCEKVC 1537
>Z74027-2|CAA98420.1| 210|Caenorhabditis elegans Hypothetical
protein C13G3.2 protein.
Length = 210
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -3
Query: 288 CETAIPNPVAQNFFCRKIVQTIYHPHHDSEIRVTRNCAWVPGDKECYT-VYNSDHAEIVC 112
C T PN F R + I +E ++ ++ ++ Y+ + D+ +VC
Sbjct: 85 CVTLFPNLPDSTFVVRGCFENILRHSRRAEEQLQQDGCYLLRSLPMYSNTVSMDY--VVC 142
Query: 111 QCFADYCNSAD 79
C DYCN+ +
Sbjct: 143 TCNGDYCNTME 153
>AF324058-1|AAK01419.1| 210|Caenorhabditis elegans Ly-6-related
protein HOT-6 protein.
Length = 210
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = -3
Query: 288 CETAIPNPVAQNFFCRKIVQTIYHPHHDSEIRVTRNCAWVPGDKECYT-VYNSDHAEIVC 112
C T PN F R + I +E ++ ++ ++ Y+ + D+ +VC
Sbjct: 85 CVTLFPNLPDSTFVVRGCFENILRHSRRAEEQLQQDGCYLLRSLPMYSNTVSMDY--VVC 142
Query: 111 QCFADYCNSAD 79
C DYCN+ +
Sbjct: 143 TCNGDYCNTME 153
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = -1
Query: 254 TFSAGRSSKPFIILITTPRSA*PGTAPGSPVIRSATPFTTATMRR*CVSASQTTATVQTV 75
T S ++ P TT + T P + + TP TT T + S + TT T +T
Sbjct: 250 TTSETTTTTPTTTTQTTTKPTTTTTTPTTTPTTTTTPTTTTTTAKTTKSTTTTTKTTKTT 309
Query: 74 PIP 66
P
Sbjct: 310 STP 312
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -1
Query: 209 TTPRSA*PGTAPGSPVIRSATPFTTATMRR*CVSASQTTATVQTVP 72
TT +A P T +P + TP TT T+ + TT T T P
Sbjct: 190 TTTTTA-PTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTP 234
>Z70038-6|CAA93882.3| 1323|Caenorhabditis elegans Hypothetical
protein ZK1067.1 protein.
Length = 1323
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 174 WVPGDKECYTVYNSDHAEIVCQCFADYCNSADS 76
W GD +C VY S + QCF Y NS S
Sbjct: 229 WGSGDNDCQRVYRSVCPKSCSQCF--YSNSTSS 259
>X57767-1|CAA40919.1| 1323|Caenorhabditis elegans tyrosine kinase
protein.
Length = 1323
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 174 WVPGDKECYTVYNSDHAEIVCQCFADYCNSADS 76
W GD +C VY S + QCF Y NS S
Sbjct: 229 WGSGDNDCQRVYRSVCPKSCSQCF--YSNSTSS 259
>D63426-1|BAA09729.1| 1374|Caenorhabditis elegans receptor tyrosine
kinase protein.
Length = 1374
Score = 28.3 bits (60), Expect = 4.4
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 174 WVPGDKECYTVYNSDHAEIVCQCFADYCNSADS 76
W GD +C VY S + QCF Y NS S
Sbjct: 280 WGSGDNDCQRVYRSVCPKSCSQCF--YSNSTSS 310
>Z81074-11|CAB03045.2| 562|Caenorhabditis elegans Hypothetical
protein F32B6.10 protein.
Length = 562
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 320 KCEESLYRWSTAKQRYLIRLLKTFSAGRSSKPF 222
K E YRW A++RY R+L+ R+ + F
Sbjct: 455 KMNEYAYRWEKARERYRQRMLRLKLNDRNKQQF 487
>U64849-5|AAC48055.1| 174|Caenorhabditis elegans Saposin-like
protein family protein19 protein.
Length = 174
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -3
Query: 147 TVYNSDHAEIVCQCFADYCNSADSTDPTSGT 55
T+ ++ EI C C D+CN + DP + +
Sbjct: 29 TIDDALPGEIKCTCSRDFCNGSFENDPNTSS 59
>Z81136-3|CAD27610.1| 196|Caenorhabditis elegans Hypothetical
protein W02B8.5 protein.
Length = 196
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = -3
Query: 162 DKECYTVYNSDHAEI----VCQCFADYCNSADST 73
D +++ +HA+ VC C D CNSA ST
Sbjct: 143 DMSASDLFSHEHADSQRIRVCSCLGDRCNSAIST 176
>U38937-1|AAA93079.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = -1
Query: 212 ITTPRSA*PGTAPGSPVIRSATPFTTATM------RR*CVSASQTTATVQTVPIPRP 60
++TP +P S V SATP T++ + R+ +S S T++T P P+P
Sbjct: 220 VSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPPPPQP 276
>U38935-1|AAB60254.1| 441|Caenorhabditis elegans LIN-1 protein.
Length = 441
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = -1
Query: 212 ITTPRSA*PGTAPGSPVIRSATPFTTATM------RR*CVSASQTTATVQTVPIPRP 60
++TP +P S V SATP T++ + R+ +S S T++T P P+P
Sbjct: 220 VSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPPPPQP 276
>AF324055-1|AAK01416.1| 151|Caenorhabditis elegans Ly-6-related
protein HOT-3 protein.
Length = 151
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = -3
Query: 162 DKECYTVYNSDHAEI----VCQCFADYCNSADST 73
D +++ +HA+ VC C D CNSA ST
Sbjct: 98 DMSASDLFSHEHADSQRIRVCSCLGDRCNSAIST 131
>AF067606-1|AAC17530.3| 441|Caenorhabditis elegans Abnormal cell
lineage protein 1 protein.
Length = 441
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = -1
Query: 212 ITTPRSA*PGTAPGSPVIRSATPFTTATM------RR*CVSASQTTATVQTVPIPRP 60
++TP +P S V SATP T++ + R+ +S S T++T P P+P
Sbjct: 220 VSTPSPTDSVCSPSSSVASSATPSTSSPVDESRQCRKRSLSPSTTSSTTAPPPPPQP 276
>AC024204-7|AAM97982.1| 614|Caenorhabditis elegans Abnormal cell
lineage protein 45,isoform b protein.
Length = 614
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = -1
Query: 182 TAPGSPVIRSATPFTTATMRR*C-----VSASQTTATVQTVPIPR 63
+AP SPV S TP +++T RR S++ TT T P PR
Sbjct: 22 SAPKSPVTSSQTPSSSSTRRRMSRINFKKSSASTTPTSPHCPSPR 66
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,670,700
Number of Sequences: 27780
Number of extensions: 255826
Number of successful extensions: 730
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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