Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d14
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1527.02 |sft2||Golgi transport protein Sft2 |Schizosaccharom...    45   9e-06
SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces pom...    29   0.49 
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   3.5  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   8.0  

>SPAC1527.02 |sft2||Golgi transport protein Sft2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 45.2 bits (102), Expect = 9e-06
 Identities = 30/114 (26%), Positives = 48/114 (42%)
 Frame = -1

Query: 656 QKEYFTLSRTQRXXXXXXXXXXXXXXXXXXXIYIPVLLLQARKFAXXXXXXXXXXXXXXX 477
           Q   F+LSR +R                      PVL+L+ RKF                
Sbjct: 56  QSSEFSLSRWERYMLFGICLLGSLACYAIACFMFPVLVLKPRKFVLLWTMGSLLAVLGFA 115

Query: 476 XLYGPWAHLKSMFSKERALTTSIYSITLIATLYCALHLQSTPWTIVCAVLQVMA 315
            + G  AH + + + ER   T  Y +TL+AT+   + ++ST  +IV  VL +++
Sbjct: 116 IVQGFVAHFRQLTTMERLPITLSYFVTLLATIIATIKIKSTILSIVFGVLHILS 169


>SPBC6B1.08c |ofd1||2-oxoglutarate and Fe|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 515

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -3

Query: 447 VNVLKGKSSYNINLQYNFDSDIILCLTSSKYTVDHSMCCLTSHGIVLDDDGVYTRRIIGH 268
           V+ L  +S + +  ++   SD  L  T+    ++ ++C     GI   D+G Y   +IG 
Sbjct: 390 VSGLPLRSFHQVGRRFRPGSDFTLATTNDTALLEATLCLSPGTGIANTDNGAYDIYMIGD 449

Query: 267 E 265
           E
Sbjct: 450 E 450


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
 Frame = -2

Query: 226 HCRFNTKILCSICLK---GF-FVVCG--*NCD*CVKLVIFSYHPIKLF 101
           HCR   KI+C  CLK   GF F + G    C  C  +++ +Y   +LF
Sbjct: 81  HCRICGKIICKYCLKEAPGFIFRLQGSIKVCRPCASILVNNYSRSQLF 128


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 276  IGHEVLWKHVQIISFKHIADLTRKY 202
            I H+  WK  QIIS   IA L   Y
Sbjct: 1212 ISHQSFWKLDQIISTNSIAPLLHSY 1236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,641
Number of Sequences: 5004
Number of extensions: 52359
Number of successful extensions: 103
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)