Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d14
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0835 + 6524532-6524648,6524748-6524801,6525528-6525601,652...    36   0.032
06_02_0060 - 11026885-11026929,11027732-11027756,11027886-110279...    33   0.29 
03_05_0451 - 24456923-24457069,24457161-24457310,24457408-244575...    28   6.3  

>01_01_0835 +
           6524532-6524648,6524748-6524801,6525528-6525601,
           6525795-6525912,6526008-6526070
          Length = 141

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -1

Query: 467 GPWAHLKSMFSKERALTTSIYSITLIATLYCALHLQSTPWTIVCAVLQVMALFW 306
           GP   L+ M    R   T+IY   +   L  AL + S   T++  + ++ ALFW
Sbjct: 88  GPSQQLRMMLDPVRVYATAIYGGFVFLALIFALWIHSKVLTLIAIICEICALFW 141


>06_02_0060 -
           11026885-11026929,11027732-11027756,11027886-11027992,
           11028023-11028103,11028301-11028405,11031495-11031762,
           11031854-11032056
          Length = 277

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 20/79 (25%), Positives = 36/79 (45%)
 Frame = -1

Query: 560 YIPVLLLQARKFAXXXXXXXXXXXXXXXXLYGPWAHLKSMFSKERALTTSIYSITLIATL 381
           ++PV+++  +KFA                L GP +    M S ER   T      ++ T+
Sbjct: 114 FLPVMVIMPQKFAICFTLGCGLIIASIFALKGPASQFAHMTSMERLPFTGALIGCMVGTI 173

Query: 380 YCALHLQSTPWTIVCAVLQ 324
           Y ++ L S   +++ +VLQ
Sbjct: 174 YVSMFLHSYFLSVIFSVLQ 192


>03_05_0451 -
           24456923-24457069,24457161-24457310,24457408-24457513,
           24457715-24458040,24458129-24458263,24458350-24458430,
           24458516-24458704,24458794-24458986,24459068-24459174,
           24459280-24459354,24459446-24459601,24459745-24459828,
           24459933-24460046,24460119-24460214,24460302-24460392,
           24460500-24460615,24460878-24461037,24461964-24462217
          Length = 859

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 113 WMVRKYN*FHTSVTVLTTDDKKSFQTYRTQYFRVKSAMCLKL 238
           W+ R Y  FHT   +L TD + +  + +  +    S MC  L
Sbjct: 720 WIGRSYR-FHTGADLLRTDSQSTDSSLKAMWQHSDSIMCCSL 760


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,631,697
Number of Sequences: 37544
Number of extensions: 287414
Number of successful extensions: 458
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)