Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d14
         (707 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-55|AAZ66445.1|  199|Drosophila melanogaster CG33635-PA ...    68   1e-11
AY118429-1|AAM48458.1|  163|Drosophila melanogaster RH26504p pro...    37   0.023
AE014296-3393|AAN12138.1|  163|Drosophila melanogaster CG5104-PB...    37   0.023

>AE014134-55|AAZ66445.1|  199|Drosophila melanogaster CG33635-PA
           protein.
          Length = 199

 Score = 68.1 bits (159), Expect = 1e-11
 Identities = 44/111 (39%), Positives = 55/111 (49%)
 Frame = -1

Query: 638 LSRTQRXXXXXXXXXXXXXXXXXXXIYIPVLLLQARKFAXXXXXXXXXXXXXXXXLYGPW 459
           LSR QR                    YIP L+L+ARKFA                L G  
Sbjct: 56  LSRLQRIVGFVACLGMGALCMTLSTFYIPFLILKARKFALLYTLGSLFFILSFCFLSGFG 115

Query: 458 AHLKSMFSKERALTTSIYSITLIATLYCALHLQSTPWTIVCAVLQVMALFW 306
           + LK MFSK R LT+  YS  LI TLYCAL  +ST +T++ AV Q++AL +
Sbjct: 116 SFLKQMFSKPRLLTSLSYSSCLILTLYCALVAKSTAFTVLFAVAQIIALLF 166


>AY118429-1|AAM48458.1|  163|Drosophila melanogaster RH26504p
           protein.
          Length = 163

 Score = 37.1 bits (82), Expect = 0.023
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = -1

Query: 467 GPWAHLKSMFSKERALTTSIYSITLIATLYCALHLQSTPWTIVCAVLQVMALFW 306
           GP+  +K MF++ R + T I  + ++ T   A+  +    T++  ++Q +A+ W
Sbjct: 87  GPFKQIKKMFAETRLIATIIVLVMMVLTFIAAIVWKKAGLTLIFIIIQSLAMTW 140


>AE014296-3393|AAN12138.1|  163|Drosophila melanogaster CG5104-PB
           protein.
          Length = 163

 Score = 37.1 bits (82), Expect = 0.023
 Identities = 14/54 (25%), Positives = 30/54 (55%)
 Frame = -1

Query: 467 GPWAHLKSMFSKERALTTSIYSITLIATLYCALHLQSTPWTIVCAVLQVMALFW 306
           GP+  +K MF++ R + T I  + ++ T   A+  +    T++  ++Q +A+ W
Sbjct: 87  GPFKQIKKMFAETRLIATIIVLVMMVLTFIAAIVWKKAGLTLIFIIIQSLAMTW 140


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,372,115
Number of Sequences: 53049
Number of extensions: 536730
Number of successful extensions: 1259
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1258
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3128965752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)