Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d13
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit...    33   0.033
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    27   2.9  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   6.7  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   8.9  

>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
           Tom40|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 33.5 bits (73), Expect = 0.033
 Identities = 38/155 (24%), Positives = 72/155 (46%), Gaps = 18/155 (11%)
 Frame = -1

Query: 647 LQAVTEQISLGAEVVARGHSAEL----SSVSAAGRWFSESHSVSATL-GNRG-LDLCYAR 486
           LQ+VT ++SLG E + +  S+ +    +++S   R+ +     +A L G++G +   + R
Sbjct: 171 LQSVTPKLSLGVEALWQKPSSSIGPEEATLSYMTRYNAADWIATAHLNGSQGDVTATFWR 230

Query: 485 AIKPYLTVAAMLE---VGFAIRRAVAT---------LAYEWRAEEWTVRGSADTDGLVGA 342
            + P +      +   VG     A+ T         +  ++   +   RG  D+ G VG 
Sbjct: 231 KLSPKVEAGVECQLSPVGLNHSAALMTGPKPEGLTSVGVKYEFAQSIYRGQVDSKGRVGV 290

Query: 341 TLQRALGGKKAQLACAISALLNHPNDKFRLGFGVT 237
            L+R L      +  A S+ L+HPN   ++G G++
Sbjct: 291 YLERRLA---PAITLAFSSELDHPNRNAKVGLGLS 322


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -3

Query: 750 NAELYSFESILDGYFNNFYDIN 685
           N ++ S +S++D YFNN +D++
Sbjct: 523 NEQMSSAQSLVDNYFNNDHDLS 544


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1465

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 196  LIFFCNEFYQIIAAVTPKPSRNL 264
            LI FC  FY I++A+   P+  L
Sbjct: 1140 LIIFCTAFYGILSAIKGSPNPGL 1162


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 319 PPSALCNVAPTSPSVSAEPRTVHSSARHS*AKVATARRIANPTSNIA 459
           P SAL +    + +V   P  VH S   S A V+T     +P   +A
Sbjct: 705 PSSALVSATSPTTNVPIVPEAVHLSTAFSTAPVSTIVSNISPLPTVA 751


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,147
Number of Sequences: 5004
Number of extensions: 50192
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)