Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14d13
(758 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0846 + 11712530-11712740,11713974-11714055,11714127-117142... 61 8e-10
01_01_1200 - 9670109-9670165,9670569-9670664,9670886-9670969,967... 58 1e-08
05_06_0229 + 26573722-26575014 33 0.25
06_03_1363 - 29576265-29577575 31 1.3
08_02_0034 - 11435678-11435702,11435787-11435816,11436364-114365... 29 4.0
07_03_0842 - 21952483-21954135,21957361-21958108,21958266-21958534 29 4.0
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 29 5.3
02_05_0779 + 31702039-31702977 28 9.3
>03_02_0846 +
11712530-11712740,11713974-11714055,11714127-11714226,
11714311-11714406,11714492-11714542,11714685-11714750,
11715413-11715514,11716099-11716167,11716251-11716334,
11716531-11716626,11717216-11717268,11718808-11718945,
11719003-11719435
Length = 526
Score = 61.3 bits (142), Expect = 8e-10
Identities = 36/147 (24%), Positives = 73/147 (49%), Gaps = 1/147 (0%)
Frame = -1
Query: 674 NRDFIALHYLQAVTEQISLGAEVVARGHSAELSSVSAAGRWFSESHSVSATLGNRGL-DL 498
N F +Y+Q+VT +S+G E+ GH + S + A R+ S+ + + + G+ L
Sbjct: 192 NNAFYGANYIQSVTPNLSMGTEIFWLGHQRK-SGIGFASRYNSDKMVGTLQVASTGIVAL 250
Query: 497 CYARAIKPYLTVAAMLEVGFAIRRAVATLAYEWRAEEWTVRGSADTDGLVGATLQRALGG 318
Y + + +++A+ R ++ Y++ + +RG D++G+V A L+ L
Sbjct: 251 SYVQKVSEKVSLASDFMYNHMSRDVTSSFGYDYMLRQCRLRGKFDSNGVVAAYLEERL-- 308
Query: 317 KKAQLACAISALLNHPNDKFRLGFGVT 237
+ +SA ++H ++ GFG+T
Sbjct: 309 -NMGVNFLLSAEIDHSKKNYKFGFGMT 334
>01_01_1200 -
9670109-9670165,9670569-9670664,9670886-9670969,
9671050-9671118,9671892-9671993,9672807-9672872,
9673791-9673841,9673953-9674048,9674141-9674279,
9674343-9674424,9674528-9674723
Length = 345
Score = 57.6 bits (133), Expect = 1e-08
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 1/146 (0%)
Frame = -1
Query: 674 NRDFIALHYLQAVTEQISLGAEVVARGHSAELSSVSAAGRWFSESHSVSATLGNRGL-DL 498
N F +Y+Q+VT+ +SLG E G + S V R+ ++ + + GL L
Sbjct: 200 NNAFYGGNYIQSVTKNLSLGTEAFWLGQQRK-SGVGFVARYDTKKMVATGQIATTGLVSL 258
Query: 497 CYARAIKPYLTVAAMLEVGFAIRRAVATLAYEWRAEEWTVRGSADTDGLVGATLQRALGG 318
Y + + +++A+ + A+ Y++ + +RG DT+G+V A L+ L
Sbjct: 259 SYVQKVSEKVSLASDFMYNHMAKDVTASFGYDYMLRQCRLRGKIDTNGVVSALLEERL-- 316
Query: 317 KKAQLACAISALLNHPNDKFRLGFGV 240
+ +SA L+H ++ GFG+
Sbjct: 317 -TPGVNFVLSAELDHWKKDYKFGFGM 341
>05_06_0229 + 26573722-26575014
Length = 430
Score = 33.1 bits (72), Expect = 0.25
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -1
Query: 431 RRAVATLAYEWRAEEWTVRGSADTDGLVGATLQRALGGKKAQLACAISALLNHP 270
RR ++ + + WR VR A L L RA GG+ +CA+S HP
Sbjct: 30 RRRMSRICHSWRVALRRVRAPAPPPPLPWLLLPRA-GGRPPTFSCALSGFRTHP 82
>06_03_1363 - 29576265-29577575
Length = 436
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 419 ATLAYEWRAEEWTVRGSADTDGLVGATLQRALGGKKAQLA 300
A AY+W A+ W R A++D L GA GGK +A
Sbjct: 340 ALTAYDWGADRW--RTVAESDRLKGAAEMTVAGGKACVVA 377
>08_02_0034 -
11435678-11435702,11435787-11435816,11436364-11436501,
11436646-11436755,11436838-11436867,11437948-11437993,
11438453-11438622,11439156-11439221,11439299-11439378,
11440704-11440842,11440933-11441013,11441112-11441147,
11441414-11441539,11442084-11442179,11443615-11443689,
11444288-11444434,11445155-11445229,11445485-11445619,
11445706-11445834,11446161-11446292,11446395-11446598
Length = 689
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 157 KYQKFIEICYIIMLIFFCNEFYQIIAAV 240
KY E CY L+F+ FY I+ A+
Sbjct: 598 KYAASFETCYSFRLLFYAGSFYPIMGAL 625
>07_03_0842 - 21952483-21954135,21957361-21958108,21958266-21958534
Length = 889
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = -1
Query: 368 ADTDGLVGATLQRALGGKKAQLACAISALLNHPNDKFRLGFGVTAAI 228
AD G + A +K Q A + LLNHP K R FGV A++
Sbjct: 313 ADGTHWPGTWFEPAENHRKGQHAGIVQVLLNHPTSKPR--FGVAASV 357
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +1
Query: 295 AQAS*AFLPPS--ALCNVAPTSPSVSAEPRTVHSSARHS*AKVATARR 432
A A+ + LPPS + V+P S ++S E H +A+H+ A A++ R
Sbjct: 108 AAAARSSLPPSPSSSSTVSPLSHTLSDEDLDAHGAAKHATAAAASSTR 155
>02_05_0779 + 31702039-31702977
Length = 312
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +1
Query: 295 AQAS*AFLPPSALCNVAPTSPSVSAEPRTVHSSAR 399
++A A +PP A+C +P+ PS S + HS++R
Sbjct: 20 SRAHLALMPPKAIC--SPSRPSASEPVKRRHSTSR 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,625,972
Number of Sequences: 37544
Number of extensions: 334949
Number of successful extensions: 1053
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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