Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d13
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70034-6|CAA93850.1|  301|Caenorhabditis elegans Hypothetical pr...    56   4e-08
U00037-5|AAA50659.1|  235|Caenorhabditis elegans Hypothetical pr...    29   3.6  

>Z70034-6|CAA93850.1|  301|Caenorhabditis elegans Hypothetical
           protein C18E9.6 protein.
          Length = 301

 Score = 55.6 bits (128), Expect = 4e-08
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 6/143 (4%)
 Frame = -1

Query: 650 YLQAVTEQISLGAEVVAR-GHS---AELSSVSAAGRWFSESHSVSATLGNRGLDLCYARA 483
           +L+ +T ++ +G E+V + G +    ++S +S A R+ +     +ATLG  G+ L Y   
Sbjct: 157 FLRRLTPRLDVGTEMVYQYGKNIPGGQISVLSYAARYTANHFIAAATLGASGVHLTYYHK 216

Query: 482 IKPYLTVAAMLEVGFAIRRAVATLAY--EWRAEEWTVRGSADTDGLVGATLQRALGGKKA 309
               L      E    +  AV TLAY  E   E  T+R S DT+  VG   ++ L  ++ 
Sbjct: 217 QNENLAFGVEFECNANVGEAVTTLAYQTELPEEGVTMRASFDTNWTVGGVFEKRL-SQQL 275

Query: 308 QLACAISALLNHPNDKFRLGFGV 240
               A+S  LNH     + G G+
Sbjct: 276 PFTLALSGTLNHVKAAGKFGIGL 298


>U00037-5|AAA50659.1|  235|Caenorhabditis elegans Hypothetical
           protein T20H4.2 protein.
          Length = 235

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 459 CDVRSRICNSTCSSYFG-LRMASRRMDSSRFC*YRRTSRSHIAESARRQESS 307
           CD  S +CNS+ S+     R   RR D  R       SRSH   S RR++++
Sbjct: 77  CDSESDVCNSSSSNNRSRCRDRRRRTDYGRRRHRNSDSRSHERWSTRRRQTT 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,399,524
Number of Sequences: 27780
Number of extensions: 296851
Number of successful extensions: 915
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)