Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d13
         (758 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    26   0.33 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   7.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   7.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   7.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   7.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.5  

>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 369 RTSNCPFFCSPFVGQS 416
           R +NCP  C P +GQS
Sbjct: 343 RKNNCPLHCKPELGQS 358


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 430  DVQ*LLWPTNGEQKNGQFEVLLIP 359
            ++Q  +WP  GE+K+  F   ++P
Sbjct: 1017 NMQWKIWPMKGEEKSRLFHYSVVP 1040


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 532 TEWLSLNHRPAADTELSSAEWPRATTSAPRDICSVTA 642
           +++L + + PA+     SA    +T+++PR   S  A
Sbjct: 814 SDYLMVGNSPASSPRYLSAAATSSTSTSPRPASSTAA 850


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -1

Query: 347 GATLQRALGGKKAQLACAISALLNHPNDKFRLGFGVTAAII 225
           G TL+  + G+  + A      L HP       +G+T + I
Sbjct: 364 GGTLENTINGRADEEAAPAPQHLIHPGKDINKLYGMTPSDI 404


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -1

Query: 347 GATLQRALGGKKAQLACAISALLNHPNDKFRLGFGVTAAII 225
           G TL+  + G+  + A      L HP       +G+T + I
Sbjct: 364 GGTLENTINGRADEEAAPAPQHLIHPGKDINKLYGMTPSDI 404


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 234 RNYLIKFITKKNQHDY 187
           ++YLI+F   KNQ  Y
Sbjct: 303 KSYLIQFFANKNQKFY 318


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -1

Query: 347 GATLQRALGGKKAQLACAISALLNHPNDKFRLGFGVTAAII 225
           G TL+  + G+  + A      L HP       +G+T + I
Sbjct: 302 GGTLENTINGRADEEAAPAPQHLIHPGKDINKLYGMTPSDI 342


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 198 QHDYIANLDEFLIFFKVILVYFS 130
           + DY  +L+E+L      L YFS
Sbjct: 298 ESDYYPDLNEWLYILSGCLYYFS 320


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,866
Number of Sequences: 438
Number of extensions: 3993
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)