Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14d12
(587 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000262-9|AAN60529.1| 820|Caenorhabditis elegans Hypothetical ... 29 1.9
Z81069-8|CAB02996.2| 600|Caenorhabditis elegans Hypothetical pr... 29 2.4
AL021448-4|CAA16278.2| 600|Caenorhabditis elegans Hypothetical ... 29 2.4
AF077536-4|AAK31409.1| 726|Caenorhabditis elegans Hypothetical ... 29 3.2
Z48809-6|CAE17928.1| 174|Caenorhabditis elegans Hypothetical pr... 27 7.5
AF022978-4|AAG24178.1| 383|Caenorhabditis elegans Hypothetical ... 27 7.5
Z74475-2|CAA98958.4| 385|Caenorhabditis elegans Hypothetical pr... 27 9.9
AC024206-4|AAK67240.1| 564|Caenorhabditis elegans Hypothetical ... 27 9.9
AC024206-3|AAF36052.1| 561|Caenorhabditis elegans Hypothetical ... 27 9.9
>AF000262-9|AAN60529.1| 820|Caenorhabditis elegans Hypothetical
protein C48E7.8 protein.
Length = 820
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +3
Query: 354 SCLDPW*ANSEFV*LCSKMYQLLYSEPFYFFSTYYPCRCLV*YIHRNSYYC*LKLTYK 527
+CL+P A L +K L PF+F + C+ L HR +YC LK T K
Sbjct: 82 TCLEPNWAVRLIDSLPTKPPGLSRKGPFFFIGDFETCKELWSVEHRQVHYCTLKGTVK 139
>Z81069-8|CAB02996.2| 600|Caenorhabditis elegans Hypothetical
protein Y2H9A.4 protein.
Length = 600
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 385 NLCDYVRKCTSCCILSHFTFFRLTTPAVVWFSIFIGI 495
N+ Y+ K CC++ F F L V+ F +F+ +
Sbjct: 119 NVTQYLSKIFRCCVIKPFVFSFLVVAGVLSFYLFLAM 155
>AL021448-4|CAA16278.2| 600|Caenorhabditis elegans Hypothetical
protein Y2H9A.4 protein.
Length = 600
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = +1
Query: 385 NLCDYVRKCTSCCILSHFTFFRLTTPAVVWFSIFIGI 495
N+ Y+ K CC++ F F L V+ F +F+ +
Sbjct: 119 NVTQYLSKIFRCCVIKPFVFSFLVVAGVLSFYLFLAM 155
>AF077536-4|AAK31409.1| 726|Caenorhabditis elegans Hypothetical
protein C16A11.3 protein.
Length = 726
Score = 28.7 bits (61), Expect = 3.2
Identities = 27/113 (23%), Positives = 48/113 (42%)
Frame = -3
Query: 507 NSSKNSDEYTKPDNGRGSKSKKSKMAQNTATGTFSNIITQIQNLPTMDLGRRFRTPCKTG 328
+SS++SD++ P S + + N + Q + +G R T C T
Sbjct: 4 DSSEDSDQFEPPRAPVSSIKIECQCGTNNTNNRLIKCVGCAQWQHAVCMGVR-PTDCVTA 62
Query: 327 NKCGKVIKRLMVPKLAQLENTIMGIMKELTKMPPGSRLPDKFTKTEPIKLLLD 169
KC RL++ +A+ E + G+ + + P ++ K TK I+ LD
Sbjct: 63 YKCEDCEPRLLIVTIAEAE-SFQGV--KPPEPTPAPKIERKTTKVLYIQRFLD 112
>Z48809-6|CAE17928.1| 174|Caenorhabditis elegans Hypothetical
protein T01E8.9 protein.
Length = 174
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = -3
Query: 279 QLENTI-MGIMKELTKMPPGSRLPDKFTKTEPIKLLLDQNYKEDVCMD 139
+L+ T+ G ++ L + P GSRL F+ ++P+ L D C D
Sbjct: 63 KLKGTVSQGPLRLLVRYPNGSRLILSFSPSQPMTSLFDAIILNPACPD 110
>AF022978-4|AAG24178.1| 383|Caenorhabditis elegans Hypothetical
protein T01G6.5 protein.
Length = 383
Score = 27.5 bits (58), Expect = 7.5
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = -3
Query: 357 RRFRTPCKTGNKCGKVIKRLMVPKLAQLENTIMGIMKELTKMPPGSRLP 211
++ R CK+GNKC K ++ + MK +K PP + +P
Sbjct: 36 KKKRKSCKSGNKCRDFNGNFPQCKSCRMRKCLRVGMKLESKSPPPAAIP 84
>Z74475-2|CAA98958.4| 385|Caenorhabditis elegans Hypothetical
protein R04F11.3 protein.
Length = 385
Score = 27.1 bits (57), Expect = 9.9
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = -3
Query: 315 KVIKRLMVPKLAQLENTIMGIMKELTKMPPGSRLPDKFTKTEPIKLLLDQNYKED 151
K KRL+VP E M + ++ T+ S LP+ +T I+ +++ ED
Sbjct: 278 KAKKRLIVPDSDDEEQVPMEVEEKKTETKTNSSLPEDRRRTTRIEKVVETYVDED 332
>AC024206-4|AAK67240.1| 564|Caenorhabditis elegans Hypothetical
protein Y74C9A.4b protein.
Length = 564
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 318 GKVIKRLMVPKLAQLENTIMGIMKELTKMPPGSRLPDKFTKTEPI 184
GK IKRL + K + ++ IM + L + P G + ++ + +PI
Sbjct: 346 GKAIKRLGIGKEKEEDDDIMVVDDCLLRKPSGPYIVEQSIEADPI 390
>AC024206-3|AAF36052.1| 561|Caenorhabditis elegans Hypothetical
protein Y74C9A.4a protein.
Length = 561
Score = 27.1 bits (57), Expect = 9.9
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 318 GKVIKRLMVPKLAQLENTIMGIMKELTKMPPGSRLPDKFTKTEPI 184
GK IKRL + K + ++ IM + L + P G + ++ + +PI
Sbjct: 343 GKAIKRLGIGKEKEEDDDIMVVDDCLLRKPSGPYIVEQSIEADPI 387
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,986,679
Number of Sequences: 27780
Number of extensions: 259110
Number of successful extensions: 791
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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