Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d11
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    26   1.7  
SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|c...    25   5.1  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    24   6.8  
SPAC18B11.08c |||conserved fungal protein|Schizosaccharomyces po...    24   9.0  

>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 362 RLMFEINVCLWNSIRFVFIQCFDFIG 285
           R   +IN C W +I  VF+ C +  G
Sbjct: 189 RYWTDINSCAWITIFLVFVICINLFG 214


>SPAC1A6.08c |mug125||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +2

Query: 188 KNYFSYISGNRSRNCSNVPCRAFF*YRTTKATRR*SQSTG*KQI*YCSINKH*SQTLT 361
           +N F        +N     CR+   YR +K+ +R   ST   +I Y   NK     LT
Sbjct: 52  ENLFFKEMRTNGKNEHETSCRSVVLYRNSKSAKRYPLSTKCARISYMQGNKDTKTALT 109


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 24.2 bits (50), Expect = 6.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 73  PNIILIVFLFLDTNYLSIVVH 135
           P + L  F+F D NYL + VH
Sbjct: 225 PYLSLPAFVFNDINYLFVYVH 245


>SPAC18B11.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 95

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +3

Query: 3   LVFYSFLIVFSNQINQNTS 59
           + + +F++ FSN +N NTS
Sbjct: 46  IAWVAFILTFSNLLNANTS 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,228,478
Number of Sequences: 5004
Number of extensions: 20247
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)