Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d11
         (375 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023498-1|AAY84898.1| 1190|Drosophila melanogaster LD32453p pro...    28   4.5  
AY121685-1|AAM52012.1|  539|Drosophila melanogaster RE36877p pro...    28   4.5  
AY069344-1|AAL39489.2|  985|Drosophila melanogaster LD05471p pro...    28   4.5  
AF179287-1|AAD52673.1| 1179|Drosophila melanogaster SMC2 protein.      28   4.5  
AE013599-2222|AAF58040.2|  539|Drosophila melanogaster CG15706-P...    28   4.5  
AE013599-1965|AAF58197.1| 1179|Drosophila melanogaster CG10212-P...    28   4.5  
AY089401-1|AAL90139.1|  267|Drosophila melanogaster AT22782p pro...    27   7.9  
AE014134-2640|AAF53485.2|  261|Drosophila melanogaster CG31826-P...    27   7.9  

>BT023498-1|AAY84898.1| 1190|Drosophila melanogaster LD32453p
           protein.
          Length = 1190

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 195 ISVTSAEIEVETAAMYHAELFFNIEQLKQLADEVKALDENKSDTV 329
           + +T  +  +ETA   H E+  N+E+ K   D +K    + +  V
Sbjct: 833 LEITELQKSIETAKKQHQEMIDNLEKFKAELDALKVNSSSAASEV 877


>AY121685-1|AAM52012.1|  539|Drosophila melanogaster RE36877p
           protein.
          Length = 539

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -2

Query: 287 GELL*LFY---IKKKLGMVHCCSFDFYF 213
           GE+   FY   I KKLG VHC S  F+F
Sbjct: 373 GEVPFFFYSGKIIKKLGYVHCMSMCFFF 400


>AY069344-1|AAL39489.2|  985|Drosophila melanogaster LD05471p
           protein.
          Length = 985

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 195 ISVTSAEIEVETAAMYHAELFFNIEQLKQLADEVKALDENKSDTV 329
           + +T  +  +ETA   H E+  N+E+ K   D +K    + +  V
Sbjct: 628 LEITELQKSIETAKKQHQEMIDNLEKFKAELDALKVNSSSAASEV 672


>AF179287-1|AAD52673.1| 1179|Drosophila melanogaster SMC2 protein.
          Length = 1179

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 195 ISVTSAEIEVETAAMYHAELFFNIEQLKQLADEVKALDENKSDTV 329
           + +T  +  +ETA   H E+  N+E+ K   D +K    + +  V
Sbjct: 822 LEITELQKSIETAKKQHQEMIDNLEKFKAELDALKVNSSSAASEV 866


>AE013599-2222|AAF58040.2|  539|Drosophila melanogaster CG15706-PA
           protein.
          Length = 539

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -2

Query: 287 GELL*LFY---IKKKLGMVHCCSFDFYF 213
           GE+   FY   I KKLG VHC S  F+F
Sbjct: 373 GEVPFFFYSGKIIKKLGYVHCMSMCFFF 400


>AE013599-1965|AAF58197.1| 1179|Drosophila melanogaster CG10212-PA
           protein.
          Length = 1179

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 195 ISVTSAEIEVETAAMYHAELFFNIEQLKQLADEVKALDENKSDTV 329
           + +T  +  +ETA   H E+  N+E+ K   D +K    + +  V
Sbjct: 822 LEITELQKSIETAKKQHQEMIDNLEKFKAELDALKVNSSSAASEV 866


>AY089401-1|AAL90139.1|  267|Drosophila melanogaster AT22782p
           protein.
          Length = 267

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 228 TAAMYH-AELFFNIEQLKQLADEVKALDENKSDTV 329
           TA + H AE  F IEQL+QL ++ + L     DT+
Sbjct: 5   TARVDHTAEQIFKIEQLRQLVEKCEDLRVGTEDTL 39


>AE014134-2640|AAF53485.2|  261|Drosophila melanogaster CG31826-PA
           protein.
          Length = 261

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 228 TAAMYH-AELFFNIEQLKQLADEVKALDENKSDTV 329
           TA + H AE  F IEQL+QL ++ + L     DT+
Sbjct: 5   TARVDHTAEQIFKIEQLRQLVEKCEDLRVGTEDTL 39


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,712,932
Number of Sequences: 53049
Number of extensions: 177109
Number of successful extensions: 382
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 982468965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)