Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14d11
(375 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical pr... 27 4.4
Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical pr... 27 4.4
Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical pr... 27 4.4
Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical pr... 27 4.4
U53150-2|AAV28350.1| 580|Caenorhabditis elegans Hypothetical pr... 27 4.4
U21107-1|AAA85118.1| 387|Caenorhabditis elegans MAP kinase kina... 27 4.4
AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical ... 27 4.4
AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical ... 27 4.4
AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B prote... 27 4.4
AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B prote... 27 4.4
AC024811-4|AAF60779.1| 387|Caenorhabditis elegans Map kinase ki... 27 4.4
Z47073-4|CAM33507.1| 954|Caenorhabditis elegans Hypothetical pr... 26 7.6
Z47073-3|CAA87374.1| 999|Caenorhabditis elegans Hypothetical pr... 26 7.6
>Z93398-7|CAD90188.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 27.1 bits (57), Expect = 4.4
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 198 SVTSAEIEVETAAMYHAELFFNIEQLKQLADEVKALDENKSD 323
+V SAE E+E AA AE ++LK+ + + L EN+ D
Sbjct: 2361 TVNSAENELELAAPIAAESLKLADELKRAEELFQKLIENEGD 2402
>Z93398-6|CAD90187.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 27.1 bits (57), Expect = 4.4
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 198 SVTSAEIEVETAAMYHAELFFNIEQLKQLADEVKALDENKSD 323
+V SAE E+E AA AE ++LK+ + + L EN+ D
Sbjct: 2361 TVNSAENELELAAPIAAESLKLADELKRAEELFQKLIENEGD 2402
>Z92788-7|CAD90177.2| 4955|Caenorhabditis elegans Hypothetical protein
ZK1151.1c protein.
Length = 4955
Score = 27.1 bits (57), Expect = 4.4
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 198 SVTSAEIEVETAAMYHAELFFNIEQLKQLADEVKALDENKSD 323
+V SAE E+E AA AE ++LK+ + + L EN+ D
Sbjct: 2361 TVNSAENELELAAPIAAESLKLADELKRAEELFQKLIENEGD 2402
>Z92788-6|CAD90176.2| 4944|Caenorhabditis elegans Hypothetical protein
ZK1151.1b protein.
Length = 4944
Score = 27.1 bits (57), Expect = 4.4
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 198 SVTSAEIEVETAAMYHAELFFNIEQLKQLADEVKALDENKSD 323
+V SAE E+E AA AE ++LK+ + + L EN+ D
Sbjct: 2361 TVNSAENELELAAPIAAESLKLADELKRAEELFQKLIENEGD 2402
>U53150-2|AAV28350.1| 580|Caenorhabditis elegans Hypothetical
protein F20A1.4 protein.
Length = 580
Score = 27.1 bits (57), Expect = 4.4
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +1
Query: 76 NIILIVFLFLDTNYLSIVVHYYSFI 150
N+IL+V + L TN++++V Y S I
Sbjct: 422 NVILLVIILLITNWITVVFFYPSAI 446
>U21107-1|AAA85118.1| 387|Caenorhabditis elegans MAP kinase kinase
protein.
Length = 387
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +1
Query: 34 LIKSIKIPQK*NRPNIILIVFLFLDTNYLSIVVHYYSFILYNLIL 168
++K + + K N P I+ F+D N +SI + Y + +++L
Sbjct: 116 IVKELAVLHKCNSPFIVGFYGAFVDNNDISICMEYMDGLSLDIVL 160
>AL031637-4|CAD90184.2| 4955|Caenorhabditis elegans Hypothetical
protein ZK1151.1c protein.
Length = 4955
Score = 27.1 bits (57), Expect = 4.4
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 198 SVTSAEIEVETAAMYHAELFFNIEQLKQLADEVKALDENKSD 323
+V SAE E+E AA AE ++LK+ + + L EN+ D
Sbjct: 2361 TVNSAENELELAAPIAAESLKLADELKRAEELFQKLIENEGD 2402
>AL031637-3|CAD90183.2| 4944|Caenorhabditis elegans Hypothetical
protein ZK1151.1b protein.
Length = 4944
Score = 27.1 bits (57), Expect = 4.4
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 198 SVTSAEIEVETAAMYHAELFFNIEQLKQLADEVKALDENKSD 323
+V SAE E+E AA AE ++LK+ + + L EN+ D
Sbjct: 2361 TVNSAENELELAAPIAAESLKLADELKRAEELFQKLIENEGD 2402
>AJ505905-1|CAD44516.1| 3522|Caenorhabditis elegans VAB-10B protein
protein.
Length = 3522
Score = 27.1 bits (57), Expect = 4.4
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 198 SVTSAEIEVETAAMYHAELFFNIEQLKQLADEVKALDENKSD 323
+V SAE E+E AA AE ++LK+ + + L EN+ D
Sbjct: 2361 TVNSAENELELAAPIAAESLKLADELKRAEELFQKLIENEGD 2402
>AJ505816-1|CAD44324.1| 4944|Caenorhabditis elegans VAB-10B protein
protein.
Length = 4944
Score = 27.1 bits (57), Expect = 4.4
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 198 SVTSAEIEVETAAMYHAELFFNIEQLKQLADEVKALDENKSD 323
+V SAE E+E AA AE ++LK+ + + L EN+ D
Sbjct: 2361 TVNSAENELELAAPIAAESLKLADELKRAEELFQKLIENEGD 2402
>AC024811-4|AAF60779.1| 387|Caenorhabditis elegans Map kinase
kinase or erk kinaseprotein 2 protein.
Length = 387
Score = 27.1 bits (57), Expect = 4.4
Identities = 12/45 (26%), Positives = 24/45 (53%)
Frame = +1
Query: 34 LIKSIKIPQK*NRPNIILIVFLFLDTNYLSIVVHYYSFILYNLIL 168
++K + + K N P I+ F+D N +SI + Y + +++L
Sbjct: 116 IVKELAVLHKCNSPFIVGFYGAFVDNNDISICMEYMDGLSLDIVL 160
>Z47073-4|CAM33507.1| 954|Caenorhabditis elegans Hypothetical
protein ZC506.4b protein.
Length = 954
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 3 LVFYSFLIVFSNQINQNTSKVK*T*YNFNSISFLGYELFKYC 128
L + FLIV T KV NFN F+G+ ++ C
Sbjct: 797 LAYDGFLIVLCTTYAVKTRKVP---ENFNETKFIGFSMYTTC 835
>Z47073-3|CAA87374.1| 999|Caenorhabditis elegans Hypothetical
protein ZC506.4a protein.
Length = 999
Score = 26.2 bits (55), Expect = 7.6
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 3 LVFYSFLIVFSNQINQNTSKVK*T*YNFNSISFLGYELFKYC 128
L + FLIV T KV NFN F+G+ ++ C
Sbjct: 842 LAYDGFLIVLCTTYAVKTRKVP---ENFNETKFIGFSMYTTC 880
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,508,750
Number of Sequences: 27780
Number of extensions: 106773
Number of successful extensions: 280
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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