Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d11
         (375 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   0.89 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   0.89 
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    20   8.3  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    20   8.3  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 0.89
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +3

Query: 6   VFYSFLIVFSNQINQNTSKVK*T*YNFNSISFLGYELFKYCCPLLFIHFV 155
           ++ + LI+ S      T K+     NFN   F+G+ ++  C  ++++ FV
Sbjct: 679 LYNALLILISTVYAVKTRKIP---ENFNESKFIGFTMYTTC--IIWLAFV 723


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 0.89
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +3

Query: 6   VFYSFLIVFSNQINQNTSKVK*T*YNFNSISFLGYELFKYCCPLLFIHFV 155
           ++ + LI+ S      T K+     NFN   F+G+ ++  C  ++++ FV
Sbjct: 769 LYNALLILISTVYAVKTRKIP---ENFNESKFIGFTMYTTC--IIWLAFV 813


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 11/41 (26%), Positives = 16/41 (39%)
 Frame = -3

Query: 223 TSISADVTEIIFTNY*RVTELNYTK*MNNNGQQYLNSSYPR 101
           TS    +   +  NY      NY    NNN     N++Y +
Sbjct: 75  TSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKK 115


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.2 bits (40), Expect = 8.3
 Identities = 11/41 (26%), Positives = 16/41 (39%)
 Frame = -3

Query: 223 TSISADVTEIIFTNY*RVTELNYTK*MNNNGQQYLNSSYPR 101
           TS    +   +  NY      NY    NNN     N++Y +
Sbjct: 75  TSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKK 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,530
Number of Sequences: 438
Number of extensions: 1429
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9052365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)