Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d10
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        30   0.24 
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    27   1.7  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    27   2.9  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    25   9.0  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    25   9.0  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   9.0  

>SPAC17A2.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 69

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 292 VKRSLFAHQWNVTDTRFALHAFFFVHDFTCHARFITSSTVTAL 420
           +KR+L  + WN  D R       F+ ++TC  +F +S +  AL
Sbjct: 1   MKRALLFYLWNQRDLRILPIVVSFLINYTCDNKFYSSPSTFAL 43


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 292 VKRSLFAHQWNVTDTRFALHAFFFVH 369
           + R L A QWNVT  +FA+    F++
Sbjct: 312 INRILVAQQWNVTGGQFAIALITFLY 337


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +3

Query: 108 QFNFIPKCDTYFKYTFRVEYQTYIVFGERKL-LQG*APNSESWCD*QHQDSFAALNRRDR 284
           + +F+ KC+  + +   +E Q+ I FG+ ++  Q    +SE  CD     S+A +  +DR
Sbjct: 631 RIDFVNKCNVGYAFINFIEPQSIITFGKARVGTQWNVFHSEKICD----ISYANIQGKDR 686

Query: 285 V 287
           +
Sbjct: 687 L 687


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/81 (20%), Positives = 36/81 (44%)
 Frame = -3

Query: 417 SGDSTASDKSSVAGEVMNEEESVEGKTSVGYVPLMGKQGTFYKKHGLFCLMPQNYPDAVN 238
           +GDS   D+SSV  + +N+++ V            G+  + ++    F     N  D ++
Sbjct: 770 NGDSPVLDESSVTCQKINDKDRVR---------FSGQSSSLFRWSATF----SNIADGIH 816

Query: 237 HTNFPNSVLNPGEVYVHRIQY 175
             +F N+    G+ + H + +
Sbjct: 817 RISFNNASTADGKDFTHSVDH 837


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 212 STLEKFTFTEYNISL 168
           STL+ FTF EYN+ L
Sbjct: 169 STLKDFTFVEYNMRL 183


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
            Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +3

Query: 42   KTIEIHNKSARKMIVLIHTKKTQFNFIPKCDTYFKYTFRVEYQT 173
            + +E   K A   +++I T   QF  +   D Y  Y +RV+  T
Sbjct: 1232 RIVEFRRKQANFQLIVI-THDEQFIRLVNSDAYCSYYYRVKRDT 1274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,679
Number of Sequences: 5004
Number of extensions: 49395
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)