Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14d10
(626 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0336 + 22121913-22122111,22122295-22122344,22122538-221226... 70 2e-12
04_04_0115 + 22868554-22868749,22868863-22868912,22870009-228701... 64 1e-10
04_04_0116 + 22877296-22877482,22877578-22877627,22879057-228791... 59 2e-09
03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447 56 3e-08
10_01_0315 - 3454846-3455465,3455562-3455663,3455828-3455954,345... 54 7e-08
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 49 3e-06
10_05_0011 - 7822847-7822880,7823653-7823754,7823859-7824106,782... 32 0.32
07_03_0297 - 16383159-16383626 30 1.7
06_03_0132 + 17024727-17025265,17025424-17025510,17025617-170256... 29 3.0
01_01_0038 + 288522-288572,289395-289512,289790-289809,290077-29... 28 7.0
04_03_0121 + 11506644-11508107 27 9.2
>02_04_0336 +
22121913-22122111,22122295-22122344,22122538-22122661,
22122810-22122917,22123610-22124265
Length = 378
Score = 69.7 bits (163), Expect = 2e-12
Identities = 30/71 (42%), Positives = 44/71 (61%)
Frame = -3
Query: 381 AGEVMNEEESVEGKTSVGYVPLMGKQGTFYKKHGLFCLMPQNYPDAVNHTNFPNSVLNPG 202
A EV ++ V+ TS G + GK G Y ++G CL Q +PDAVNH +FP+ ++ PG
Sbjct: 306 AMEVWADQPGVQFYTSNGLAGVRGKGGRVYGRYGALCLETQGFPDAVNHPSFPSQIVRPG 365
Query: 201 EVYVHRIQYKF 169
+VY H + +KF
Sbjct: 366 QVYEHNMVFKF 376
Score = 35.9 bits (79), Expect = 0.026
Identities = 13/20 (65%), Positives = 18/20 (90%)
Frame = -3
Query: 558 TGRVMELYSNQPGLQFYTGN 499
TGR ME++++QPG+QFYT N
Sbjct: 303 TGRAMEVWADQPGVQFYTSN 322
>04_04_0115 +
22868554-22868749,22868863-22868912,22870009-22870195,
22870226-22870333,22872501-22873165
Length = 401
Score = 63.7 bits (148), Expect = 1e-10
Identities = 25/48 (52%), Positives = 33/48 (68%)
Frame = -3
Query: 312 GKQGTFYKKHGLFCLMPQNYPDAVNHTNFPNSVLNPGEVYVHRIQYKF 169
GK G Y ++G CL Q +PDAVNH NFP+ ++ PG+VY H + YKF
Sbjct: 352 GKGGKAYGQYGALCLETQGFPDAVNHPNFPSVIVRPGQVYKHEMVYKF 399
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/41 (53%), Positives = 27/41 (65%), Gaps = 7/41 (17%)
Frame = -3
Query: 594 DLTFHARALHPVT-------GRVMELYSNQPGLQFYTGNLL 493
D+ HA AL VT GR +EL++NQPG+QFYTGN L
Sbjct: 306 DVDAHAHALRRVTVVRDGKSGRSLELWANQPGVQFYTGNFL 346
>04_04_0116 +
22877296-22877482,22877578-22877627,22879057-22879180,
22879266-22879373,22879462-22880084
Length = 363
Score = 59.3 bits (137), Expect = 2e-09
Identities = 24/50 (48%), Positives = 33/50 (66%)
Frame = -3
Query: 318 LMGKQGTFYKKHGLFCLMPQNYPDAVNHTNFPNSVLNPGEVYVHRIQYKF 169
+ GK G Y+++G FCL Q Y DAVNH FP+ + PG+VY H + +KF
Sbjct: 312 IKGKGGKVYQQYGGFCLETQGYVDAVNHPEFPSMTVRPGQVYRHDMAFKF 361
Score = 35.9 bits (79), Expect = 0.026
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -3
Query: 579 ARALHPVTGRVMELYSNQPGLQFYTGNLL 493
A A +GR +EL++NQP +Q YTGN L
Sbjct: 281 AAARDGASGRALELWANQPAMQLYTGNWL 309
>03_03_0155 - 14933469-14934335,14934529-14934578,14935435-14935447
Length = 309
Score = 55.6 bits (128), Expect = 3e-08
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = -3
Query: 312 GKQGTFYKKHGLFCLMPQNYPDAVNHTNFPNSVLNPGEVYVHRIQYKFGI 163
GK G Y KHG CL Q+YPDAV++ FP + G+ Y H + YKF +
Sbjct: 257 GKGGARYVKHGGLCLETQDYPDAVHNAKFPTEIYRKGQEYKHYMLYKFSL 306
Score = 45.2 bits (102), Expect = 4e-05
Identities = 18/24 (75%), Positives = 22/24 (91%)
Frame = -3
Query: 564 PVTGRVMELYSNQPGLQFYTGNLL 493
P +GRV+EL+S+QPGLQFYTGN L
Sbjct: 229 PTSGRVLELWSDQPGLQFYTGNFL 252
>10_01_0315 -
3454846-3455465,3455562-3455663,3455828-3455954,
3456698-3456727,3456828-3456877,3457004-3457106
Length = 343
Score = 54.4 bits (125), Expect = 7e-08
Identities = 22/48 (45%), Positives = 30/48 (62%)
Frame = -3
Query: 312 GKQGTFYKKHGLFCLMPQNYPDAVNHTNFPNSVLNPGEVYVHRIQYKF 169
GK G Y KH CL Q +P+A+N NFP+ V+ PGE Y H + ++F
Sbjct: 294 GKGGAVYGKHSGVCLETQGFPNAINQPNFPSVVVQPGEKYKHTMLFEF 341
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 624 NXCVTQGTAQDLTFHARALHPVTG-RVMELYSNQPGLQFYTGN 499
N + G ++ HA L + R ++L+++ PG+QFYT N
Sbjct: 245 NYVLDSGEEKNGLKHAAKLKDSSNSRTLDLWTDAPGMQFYTAN 287
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/40 (50%), Positives = 26/40 (65%)
Frame = -3
Query: 318 LMGKQGTFYKKHGLFCLMPQNYPDAVNHTNFPNSVLNPGE 199
++GK G Y KH CL Q +P+AVN NFP+ V+ PGE
Sbjct: 432 IVGKGGAVYGKHAGLCLETQGFPNAVNQPNFPSVVVQPGE 471
Score = 36.7 bits (81), Expect = 0.015
Identities = 13/29 (44%), Positives = 22/29 (75%)
Frame = -3
Query: 579 ARALHPVTGRVMELYSNQPGLQFYTGNLL 493
A+ P + RV++++++ PG+QFYTGN L
Sbjct: 401 AKVTDPSSSRVLDIWADAPGVQFYTGNFL 429
>10_05_0011 -
7822847-7822880,7823653-7823754,7823859-7824106,
7824195-7824240,7824368-7825984,7826673-7826797,
7826915-7829083
Length = 1446
Score = 32.3 bits (70), Expect = 0.32
Identities = 13/24 (54%), Positives = 18/24 (75%)
Frame = -3
Query: 537 YSNQPGLQFYTGNLLPDPDKIVET 466
YSN+P + Y G LL +P+KIV+T
Sbjct: 741 YSNEPPFRGYDGTLLQNPNKIVQT 764
>07_03_0297 - 16383159-16383626
Length = 155
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Frame = -3
Query: 375 EVMNEEESVEGKTSVGYVPLMGKQGTFYKKHGLFCL-MPQNYPD------AVNHTNF 226
EV + +E + G+ L+ K +FY +HG+ L M + Y D +NHTN+
Sbjct: 43 EVKSTKEKFQAIRDDGWESLLEKMYSFYDEHGILRLDMEEEYIDRHKPRKKINHTNY 99
>06_03_0132 +
17024727-17025265,17025424-17025510,17025617-17025673,
17028754-17028992,17029161-17029279,17029395-17029481,
17029570-17029629
Length = 395
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = +1
Query: 463 WSLDYFIWIRQKIPGIELQARLVTVQLHNSSGYWMEGSGMKS 588
WS + + + ++P +LQ ++++ L+ +S WM G+ S
Sbjct: 184 WSYEILVLLSGRLPNPKLQTSVLSISLNTASLVWMIPFGLGS 225
>01_01_0038 +
288522-288572,289395-289512,289790-289809,290077-290109,
290648-290779,290859-290948,291402-291527
Length = 189
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +3
Query: 78 MIVLIHTKKTQFNFIPKCDTYFKYTFRVEYQTYIVFG 188
+I+L+ ++K NF+ D +F Y F +Q+Y++ G
Sbjct: 24 VILLVSSRKNSHNFLFSKDLFFVYCF---HQSYLMLG 57
>04_03_0121 + 11506644-11508107
Length = 487
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 270 LMPQNYPDAVNH-TNFPNSVLNPGEVYVHRIQYKFG 166
L+P+ YPD V H + ++VL+P HR++ FG
Sbjct: 175 LLPE-YPDVVIHRSQVSSNVLHPPTAVKHRVEAFFG 209
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,465,704
Number of Sequences: 37544
Number of extensions: 288597
Number of successful extensions: 651
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -