Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d10
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical ...    39   0.003
AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical...    39   0.003
Z81557-2|CAB04536.1|  354|Caenorhabditis elegans Hypothetical pr...    31   0.67 
U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical pr...    31   0.67 
AL132860-26|CAB60511.2|  700|Caenorhabditis elegans Hypothetical...    27   8.3  
AC006620-5|AAF39776.2|  328|Caenorhabditis elegans Hypothetical ...    27   8.3  

>AF125952-4|AAD14698.1|  330|Caenorhabditis elegans Hypothetical
           protein C01B4.6 protein.
          Length = 330

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -3

Query: 327 YVPLMGKQGTFYKKHGLFCLMPQNYPDAVNHTNFPNSVLNPGEVYVHRIQYKF 169
           ++   GK+G  YK +    + PQ +  A N  +FP+  L PG+ Y   I Y F
Sbjct: 274 FLDCKGKKGEHYKANKALAIEPQFHSAAPNFDHFPDVSLRPGDHYCQEIVYTF 326


>AC006722-10|ABP57811.1|  330|Caenorhabditis elegans Hypothetical
           protein Y19D10A.16 protein.
          Length = 330

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = -3

Query: 327 YVPLMGKQGTFYKKHGLFCLMPQNYPDAVNHTNFPNSVLNPGEVYVHRIQYKF 169
           ++   GK+G  YK +    + PQ +  A N  +FP+  L PG+ Y   I Y F
Sbjct: 274 FLDCKGKKGEHYKANKALAIEPQFHSAAPNFDHFPDVSLRPGDHYCQEIVYTF 326


>Z81557-2|CAB04536.1|  354|Caenorhabditis elegans Hypothetical
           protein F59A1.4 protein.
          Length = 354

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -2

Query: 88  KTIILRALLL*ISMVLIAILFYCGFIIWR 2
           K+I+L  +LL I ++  +I+ YCG  IWR
Sbjct: 197 KSILLAVILLKIVVISCSIVTYCGIRIWR 225


>U61948-1|AAB03144.2| 1432|Caenorhabditis elegans Hypothetical protein
            C46A5.4 protein.
          Length = 1432

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -3

Query: 282  GLFCLMPQNYPDAVNHTNFPNSVLNPGEVYVHRIQYKFGILLG 154
            G+F  M  N+ +  NH N   +  NP  VY     +   IL+G
Sbjct: 1122 GVFTRMNDNFQNMTNHVNLTETFSNPSPVYDKNSGHMESILMG 1164


>AL132860-26|CAB60511.2|  700|Caenorhabditis elegans Hypothetical
           protein Y56A3A.32 protein.
          Length = 700

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 339 TSVGYVPLMG-KQGTFYKKHGLFCLMPQNYPDAVN 238
           T + Y PL G K+  FY+  G F + P++ P AV+
Sbjct: 297 TKLAYTPLSGKKRDIFYEVDGFF-VSPEDLPKAVH 330


>AC006620-5|AAF39776.2|  328|Caenorhabditis elegans Hypothetical
           protein C51G7.5 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 339 TSVGYVPLMG-KQGTFYKKHGLFCLMPQNYPDAVN 238
           T + Y PL G K+  FY+  G F + P++ P AV+
Sbjct: 29  TKLAYTPLSGKKRDIFYEVDGFF-VSPEDLPKAVH 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,753,299
Number of Sequences: 27780
Number of extensions: 272574
Number of successful extensions: 690
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)