Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d10
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2 pr...    25   0.60 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   3.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   3.2  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   7.4  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    21   9.8  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    21   9.8  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    21   9.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   9.8  

>DQ485319-1|ABF21078.1|  175|Apis mellifera icarapin variant 2
           precursor protein.
          Length = 175

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 205 WRSLRSPNTI*VWYSTRKVYLKYV 134
           W +L  PN +  WY T + ++K V
Sbjct: 28  WNTLLRPNFLDGWYQTLQTHMKKV 51


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 101 FCMNQDNHFTRALIVNFD 48
           + +NQ  HF RA + N D
Sbjct: 30  YALNQSLHFVRASLSNLD 47


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 101 FCMNQDNHFTRALIVNFD 48
           + +NQ  HF RA + N D
Sbjct: 120 YALNQSLHFVRASLSNLD 137


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 581 MPEPSIQ*PEELWSCTVTNLACSSIPG 501
           MP+P I  P+ LW  T   ++   IPG
Sbjct: 35  MPQPCILKPKPLW--TGKQISSLIIPG 59


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
           precursor protein.
          Length = 223

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 205 WRSLRSPNTI*VWYST 158
           W +L  PN +  WY T
Sbjct: 72  WNTLLRPNFLDGWYQT 87


>AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-rich
           protein precursor protein.
          Length = 223

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 205 WRSLRSPNTI*VWYST 158
           W +L  PN +  WY T
Sbjct: 72  WNTLLRPNFLDGWYQT 87


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.
          Length = 223

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -2

Query: 205 WRSLRSPNTI*VWYST 158
           W +L  PN +  WY T
Sbjct: 72  WNTLLRPNFLDGWYQT 87


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 218 RCSTLEKFTFTEYNISLVFYSEGIFEIRITFWY 120
           RC +L+    ++ +ISL  + +   ++R+T  Y
Sbjct: 214 RCWSLDSTAASDEDISLTTHQQKRHKLRVTRCY 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,429
Number of Sequences: 438
Number of extensions: 3535
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)