Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d08
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    41   2e-04
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy...    25   9.9  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   9.9  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 22/53 (41%), Positives = 28/53 (52%)
 Frame = -1

Query: 238 IFIHIIPQGTPYILIPFXXXXXXXXXXIRPGTLAVRLTANIIAGHLLITFLRG 80
           +F   +P GTP  LIP            R  +L +RL ANIIAGHL ++ L G
Sbjct: 149 VFGLFLPSGTPTPLIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTMSILGG 201


>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 215

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 170 HQKYYSTWNFSSXINS*HNCRTFINNXPKRNRN 72
           H+    T+N SS I+S  N  +   N   RNR+
Sbjct: 143 HRSLIETYNLSSRISSSDNSSSSTGNEEVRNRS 175


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 263 WMN*KYKSHIYSYNS-TRNTLYFNTIYSNY*NHQKYYSTWNFSSXINS*HNCRTFINNXP 87
           W +  YKS+ Y Y S   N   F+ I+  + +   YYS +N  +     ++ R  +NN P
Sbjct: 316 WKSCFYKSY-YEYRSWFHNVTNFSRIWVMHISAYWYYSAYNSPNLYTKNYHIR--LNNKP 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,886,004
Number of Sequences: 5004
Number of extensions: 31004
Number of successful extensions: 66
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)