Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14d04
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces pomb... 49 6e-07
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.16
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 30 0.28
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch... 29 0.64
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 29 0.85
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 29 0.85
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 28 1.1
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 28 1.5
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 2.0
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 2.0
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po... 27 2.6
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 27 3.4
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|... 27 3.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.4
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 27 3.4
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 26 4.5
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo... 26 4.5
SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase Cdc... 26 6.0
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 26 6.0
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 26 6.0
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 7.9
>SPAC4G9.03 |adk1||adenylate kinase Adk1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 220
Score = 49.2 bits (112), Expect = 6e-07
Identities = 39/128 (30%), Positives = 61/128 (47%), Gaps = 6/128 (4%)
Frame = -2
Query: 697 AGNQTVAETISDITGYNMIRPGELERVEATRDTVRGRMVAEKIRTLEDL-PEQLTVDLIK 521
AG T A I G + G++ R + R T G+ A+KI L + + +IK
Sbjct: 14 AGKGTQAPNIQKKYGIAHLATGDMLRSQVARQTELGKE-AKKIMDQGGLVSDDIVTGMIK 72
Query: 520 EEMLSQPEAK-GFILVGFPRN----SRMSDIFSRQVKWPEKVVALEVDNEVAAARLQNKL 356
+E+L+ PE K GFIL GFPR +++ + V+ L+VD+E+ R+ +L
Sbjct: 73 DEILNNPECKNGFILDGFPRTVVQAEKLTALLDELKLDLNTVLELQVDDELLVRRITGRL 132
Query: 355 SELGRPES 332
G S
Sbjct: 133 VHPGSGRS 140
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.16
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -2
Query: 244 VDSTDNRTALASTLKEILSDTMEKNKRPVSPEPRPPSTVSAPAVLPPSAEVQPTP 80
+ S+ + ALA+ L ++ + PV P+ P +SAP PP V P P
Sbjct: 1664 IRSSKDAAALAAKLFGGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 30.3 bits (65), Expect = 0.28
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = -2
Query: 397 VDNEVAAARLQNKLSELGRPESEINAARQIIRDAAHKVKNV-QKRFARHVVTVDSTDNRT 221
+DN A + +++EL R +E+N R I + + + + K F + +V + +
Sbjct: 216 IDNVSANEMERREIAELARETTELNELRSSIGQSDNGFEKIFTKMFTKDIVRLREVPDAW 275
Query: 220 ALASTLKEI-LSDTMEKNKRPVSP 152
S KE+ S+ +E ++ SP
Sbjct: 276 TYRSPPKELSYSELLENAEKATSP 299
>SPAC644.12 |cdc5||cell division control protein
Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 757
Score = 29.1 bits (62), Expect = 0.64
Identities = 22/85 (25%), Positives = 44/85 (51%)
Frame = -2
Query: 571 IRTLEDLPEQLTVDLIKEEMLSQPEAKGFILVGFPRNSRMSDIFSRQVKWPEKVVALEVD 392
+ TL LP+ + +D ++EMLS+ A+ G + ++ D +Q++ ++ L+
Sbjct: 143 LETLPALPDAIDMDEDEKEMLSEARARLANTQG--KKAKRKD-REKQLELTRRLSHLQKR 199
Query: 391 NEVAAARLQNKLSELGRPESEINAA 317
E+ AA + KL + E + NA+
Sbjct: 200 RELKAAGINIKLFRRKKNEMDYNAS 224
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 28.7 bits (61), Expect = 0.85
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = -2
Query: 274 QKRFARHVVTVDSTDNRTALASTLKEILSDTMEKNKRPVSPEPRPPSTVSAPAVL 110
+KR V+ S D T TL++++ K P PRPPS S PA+L
Sbjct: 24 EKRLIEQVIRETSKDPVTQQECTLEDLVPV-----KVPDFVRPRPPSATSLPALL 73
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 28.7 bits (61), Expect = 0.85
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = -2
Query: 241 DSTDNRTALASTLKEIL-SDTMEKNKRPVSPE-PRPPSTVSAPAVLPPSAEVQPTPDTAD 68
DST N T L+ IL S +E + V+ P+PPS + A +PP A T + D
Sbjct: 346 DSTSNSTEYDDQLQSILRSLAIEGDDDEVAKVLPKPPSVPTIQAPIPPEAPRNLTNASVD 405
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -2
Query: 166 RPVSPEPRPPSTVSAPAVLPPSAEVQPTP 80
+P +P PPS S P+ +PP P P
Sbjct: 176 QPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -2
Query: 256 HVVTVDSTDNRTALASTLKEILSDTMEKNKRPVSPEPRPPSTVS 125
H T+D++ + T+LAST +S + + K + E P ST S
Sbjct: 284 HTSTLDASSSNTSLASTGPMTVSSSTVERKGKEASEVNPNSTSS 327
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 181 MEKNKRPVSPEPRPPSTVSAPAVLPPSAEVQPTP 80
M+ + P S EP S V+AP V P++ V P P
Sbjct: 137 MDASSAPASQEPSA-SGVNAPTVSAPNSMVSPPP 169
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.5 bits (58), Expect = 2.0
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 2/119 (1%)
Frame = -2
Query: 538 TVDLIKEEMLSQPEAKGFILVG--FPRNSRMSDIFSRQVKWPEKVVALEVDNEVAAARLQ 365
TV + +E P LV S + + S+ ++ EKV ALE D E+ +Q
Sbjct: 512 TVQVALDEYAQNPSTASETLVNKELANFSSIKEAVSKTLELREKVRALECDVEIQKQTVQ 571
Query: 364 NKLSELGRPESEINAARQIIRDAAHKVKNVQKRFARHVVTVDSTDNRTALASTLKEILS 188
++S NA ++ + ++KN++ + +S N L LKE+L+
Sbjct: 572 YQIS---------NAVKENSNTLSEQIKNLESELNSSKIKNESLLNERNL---LKEMLA 618
>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 875
Score = 27.1 bits (57), Expect = 2.6
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 2/113 (1%)
Frame = -2
Query: 400 EVDNEVAAARLQNKLSELGRPESEINAARQIIRDAAHKVKNVQKRFARHVVTV--DSTDN 227
E+ L N LS + P+S I+ +++R K+ + + F +V + + +
Sbjct: 378 EIGRRKLLKSLTNSLSTMALPDSLISLHIELLR----KLCSSENDFCSLLVEIITEVFEQ 433
Query: 226 RTALASTLKEILSDTMEKNKRPVSPEPRPPSTVSAPAVLPPSAEVQPTPDTAD 68
+ T ++ S+ E NK E S S LPP+ +P PD D
Sbjct: 434 GHSQNQTEEQGNSNAPELNKNDYEGEEITVSQKSPSPSLPPNELNEPEPDDMD 486
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 583 VAEKIRTLEDLPEQLTVDLIKEEMLSQPEA 494
+ E +R DLPE L + L KEE L P++
Sbjct: 781 IHEVLRLRFDLPENLKLQLNKEEALLPPKS 810
>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
L15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 26.6 bits (56), Expect = 3.4
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Frame = -1
Query: 656 RXQHDPAGRTGKS--RGYKGHGQRENGRRKDSNARGST 549
R PA GK+ RG+KG GQR R K G T
Sbjct: 16 RVGRGPASGLGKTSGRGHKGSGQRRGRRIKPGFEGGQT 53
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -2
Query: 163 PVSPEPRPPSTVSAPAVLPPSAEVQPTPDTA 71
P P P +V+AP V PS+ + P P A
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPA 1185
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 160 VSPEPRPPSTVSAPAVLPPSAEVQPTP 80
+ P P+P +V+AP V PS V P P
Sbjct: 1091 IPPVPKP--SVAAPPVPKPSVAVPPVP 1115
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Frame = -2
Query: 211 STLKEILSDTMEKNKRPV--SPEPRPPSTV-----SAPAVLPPSAEVQPTP 80
S L +SDT+E+ ++ + SP P PP+ + AP +PP A + P
Sbjct: 711 SPLLPDVSDTVEEQQKLLLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGP 761
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = -2
Query: 190 SDTMEKNKRPVSPEPRPPSTVSAPAVLPPSAEVQ 89
S+T++ + P+P +T SAP+ P V+
Sbjct: 277 SETVKSEQETAVEHPKPTATTSAPSASPTGVPVE 310
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 4.5
Identities = 38/178 (21%), Positives = 73/178 (41%), Gaps = 11/178 (6%)
Frame = -2
Query: 694 GNQTVAETISDITGYNMIRPGELERVEATRDTVRGRMVAEKI--RTLEDLPEQLTV---D 530
G QT+ + T YN++R ELE R ++++ ++ D+ + T +
Sbjct: 125 GKQTLFGRVVGDTIYNVVRISELELDANQRPVFPPKIISTEVIDNYFTDIKPRSTKEERE 184
Query: 529 LIKEEMLSQPEAK--GFILVGFPRNSRMSDIFSRQVKWPEKVVALEVDNEVAAARLQNKL 356
I E+ Q + K +L RN + F +V P +V + + +R +
Sbjct: 185 KIANELAHQEKQKERNKLLKSGRRNKAVLS-FGDEVDMP--IVKKPLRQKTPVSRSSDTT 241
Query: 355 SELGR----PESEINAARQIIRDAAHKVKNVQKRFARHVVTVDSTDNRTALASTLKEI 194
+EL + S I++ + K +AR V T+D+ N ++ + +EI
Sbjct: 242 TELSKDLISSSSSIHSTYSSAQTGLTSAKVSSDEYARQVDTLDTKLNSSSKSKVQEEI 299
>SPAC1F7.08 |fio1||iron transport multicopper oxidase
Fio1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 622
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 277 VQKRFARHVVTVDSTDNRTALASTLKEILSDTMEKNKRP 161
V +R++ V +STD A+ + + E L DT+ N P
Sbjct: 257 VAQRYSVLVTAKNSTDRNYAITAYMDESLFDTIPDNYNP 295
>SPBC21.06c |cdc7|pld1, its10|serine/threonine protein kinase
Cdc7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1062
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 229 NRTALASTLKEILSDTMEKNKRPVSPEPRPPSTVSAPAVLPP 104
N+T+ + +KE+ D ++ K P P S +S P + PP
Sbjct: 1011 NQTSDSVLVKELAKDLLKYLKVPQGPINEHKSPISKPHMPPP 1052
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = -2
Query: 190 SDTMEKNKRPVSPEPRPPSTVSAPAVLPPSAEVQPTPDTADE 65
S N SP VS P ++ P+ +PTP +DE
Sbjct: 513 SQAQSPNLATPSPSFSSLPDVSLPPIVKPNLMSEPTPTNSDE 554
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 169 KRPVSPEPRPPSTVSAPAVLPPSAEVQPTPDT 74
K SP P PP++V V PS+ V + T
Sbjct: 83 KSAASPAPNPPASVPEKKVEAPSSTVAESTST 114
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = -2
Query: 400 EVDNEVAAARLQNKLSELGRPESEINAARQIIRDAAHKVKNVQKR 266
EVD E +LQN+L EL E++ A+ ++ + ++ ++++
Sbjct: 280 EVDYEYEIRQLQNRLDEL---SEELDVAQDLLTEKEDEIATLKRQ 321
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,629,460
Number of Sequences: 5004
Number of extensions: 51224
Number of successful extensions: 224
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 223
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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