Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d04
         (698 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    26   0.40 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   2.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.4  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.5  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 698 SREPDSRGDDIRHH-RXQHDPAGRTGKSRGYKGHGQRENGRRKDSN 564
           +R+ D+R +D + +   Q+D      +    K +G R+NG +++ N
Sbjct: 458 NRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDN 503



 Score = 24.6 bits (51), Expect = 0.91
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = -1

Query: 680 RGDDIRHHRXQHDPAGRTGKSRGYKGHGQRENGRRKDSNAR 558
           + D+ ++   Q+D      +  G K +  ++NG R++ N R
Sbjct: 475 QNDNKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKR 515



 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/45 (20%), Positives = 23/45 (51%)
 Frame = -1

Query: 698 SREPDSRGDDIRHHRXQHDPAGRTGKSRGYKGHGQRENGRRKDSN 564
           ++  D++  + ++   Q+D      K  G + +  ++NG R++ N
Sbjct: 444 NQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDN 488


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 129 TVDGGRGSGETGRLFFSMVSD 191
           T    +   ETG LFF +VSD
Sbjct: 301 TQASAKAISETGALFFGLVSD 321


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/43 (27%), Positives = 18/43 (41%)
 Frame = -2

Query: 619  VEATRDTVRGRMVAEKIRTLEDLPEQLTVDLIKEEMLSQPEAK 491
            VEA R   RG M   +  +   +P       +KE  L +P  +
Sbjct: 1049 VEAVRAVQRGEMSVHRAGSYYGVPHSTLEYKVKERHLMRPRKR 1091


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 144 RGSGETGRLFFSMVSDKISLSVEAKAVRLSVLSTVTTCR 260
           R  GET +     +   +SL     A   SV+S  +TC+
Sbjct: 543 RNGGETNKQELKRLKSTVSLLPLPLARTPSVMSASSTCK 581


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -2

Query: 583 VAEKIRTLEDLPEQLTVDLIKEEMLSQPEAKGFILVG 473
           + EK+     + +    D I  ++L++P A+G I+ G
Sbjct: 313 IKEKLVKDSGVAKDAAYDNIVLKLLTKPRARGCIIFG 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,744
Number of Sequences: 438
Number of extensions: 3867
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)