Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d03
         (825 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119054-1|AAM50914.1|  451|Drosophila melanogaster LP06969p pro...    30   4.4  
AE014296-402|AAF47603.1|  451|Drosophila melanogaster CG1139-PA ...    30   4.4  
AE013599-472|AAF59215.4|  430|Drosophila melanogaster CG1339-PA ...    29   7.7  

>AY119054-1|AAM50914.1|  451|Drosophila melanogaster LP06969p
           protein.
          Length = 451

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 6   YLFK-YKYINASVISVLMKSNLISIKFTCCYYQLD*SVILESPGSFCYLKPFIIIFVIIL 182
           YL K +K    +   ++ ++ ++ + F C     D SV L   GSFC L    +IF ++L
Sbjct: 346 YLAKRFKETRQTFYELIFRAIIVLLTFGCAVAIPDLSVFLSLVGSFC-LSILGLIFPVLL 404

Query: 183 QL 188
           Q+
Sbjct: 405 QI 406


>AE014296-402|AAF47603.1|  451|Drosophila melanogaster CG1139-PA
           protein.
          Length = 451

 Score = 29.9 bits (64), Expect = 4.4
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 6   YLFK-YKYINASVISVLMKSNLISIKFTCCYYQLD*SVILESPGSFCYLKPFIIIFVIIL 182
           YL K +K    +   ++ ++ ++ + F C     D SV L   GSFC L    +IF ++L
Sbjct: 346 YLAKRFKETRQTFYELIFRAIIVLLTFGCAVAIPDLSVFLSLVGSFC-LSILGLIFPVLL 404

Query: 183 QL 188
           Q+
Sbjct: 405 QI 406


>AE013599-472|AAF59215.4|  430|Drosophila melanogaster CG1339-PA
           protein.
          Length = 430

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 20/71 (28%), Positives = 34/71 (47%)
 Frame = -2

Query: 542 TIHYDSL*VKTSFLNIKELFIKFLPFCFSLCHLYQLCFL**MYAILGLLNSIPSHFCDRV 363
           T+  DSL  K  FL+   L+   L +CF+   +YQL  L   + I+  L        +R+
Sbjct: 181 TVMLDSLWYKPYFLSSIFLYWVLLEYCFAGYFIYQLILLSWYHTIILFLQRFIEDHANRL 240

Query: 362 FSCINYYCTII 330
              ++Y+  +I
Sbjct: 241 DIELHYHRRLI 251


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,681,727
Number of Sequences: 53049
Number of extensions: 534306
Number of successful extensions: 924
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3901127880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)