Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d03
         (825 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82089-1|CAB05002.1|  983|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z81511-2|CAB04167.1|  983|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z73973-1|CAA98266.1|  357|Caenorhabditis elegans Hypothetical pr...    28   9.3  

>Z82089-1|CAB05002.1|  983|Caenorhabditis elegans Hypothetical protein
            ZK270.1 protein.
          Length = 983

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = -2

Query: 503  LNIKELFIKFLPFCFSLCHLYQLCFL**MYAILGLLNSI 387
            L + E+F+K +  C  LC+L+ L FL    AIL LL+SI
Sbjct: 905  LYMAEVFVKTMVLCVVLCNLHGLVFL---PAILILLDSI 940


>Z81511-2|CAB04167.1|  983|Caenorhabditis elegans Hypothetical protein
            ZK270.1 protein.
          Length = 983

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/39 (46%), Positives = 25/39 (64%)
 Frame = -2

Query: 503  LNIKELFIKFLPFCFSLCHLYQLCFL**MYAILGLLNSI 387
            L + E+F+K +  C  LC+L+ L FL    AIL LL+SI
Sbjct: 905  LYMAEVFVKTMVLCVVLCNLHGLVFL---PAILILLDSI 940


>Z73973-1|CAA98266.1|  357|Caenorhabditis elegans Hypothetical
           protein F25D1.2 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/77 (20%), Positives = 31/77 (40%)
 Frame = -1

Query: 801 GAINFGFSRNNFYVFRREIISMPIPGSIVPTN*CLIGGRY*FSIYGSTQLLCLKISIQGT 622
           G    G+S  + +V    ++ + +P S+ PTN   +   +    + +  +  L   I  T
Sbjct: 88  GRFVMGYSAGSGFVCAPAVLRLAVPESMRPTNFLFLAAAFSMGTFLANSMFLLSELISPT 147

Query: 621 LLVSSSITLNNFTYIIL 571
            L +         Y+IL
Sbjct: 148 FLSAGLTASAGILYLIL 164


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,252,902
Number of Sequences: 27780
Number of extensions: 308788
Number of successful extensions: 655
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)