Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14d01
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    30   0.34 
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo...    30   0.34 
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    30   0.34 
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    30   0.45 
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   9.7  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   9.7  

>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +2

Query: 149 KINCFRNI---QQ*QINVKKIEVEYLNTNELNAFSKEYSYCFGDG 274
           K N F NI   Q+ +IN+K  ++++   N    FSK +  C+ DG
Sbjct: 24  KQNLFTNIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHDSCYPDG 68


>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 165

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +2

Query: 149 KINCFRNI---QQ*QINVKKIEVEYLNTNELNAFSKEYSYCFGDG 274
           K N F NI   Q+ +IN+K  ++++   N    FSK +  C+ DG
Sbjct: 44  KQNLFTNIIKPQKDKINIKTDKIKFFLNNLFTEFSKFHDSCYPDG 88


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +2

Query: 149 KINCFRNI---QQ*QINVKKIEVEYLNTNELNAFSKEYSYCFGDG 274
           K N F NI   Q+ +IN+K  ++++   N    FSK +  C+ DG
Sbjct: 24  KQNLFTNIVKPQKDKINIKTDKIKFFLNNLFTEFSKFHDSCYPDG 68


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
 Frame = +2

Query: 149 KINCFRNI---QQ*QINVKKIEVEYLNTNELNAFSKEYSYCFGDG 274
           K N F NI   Q+ +IN+K  ++++   N    FSK +  C+ DG
Sbjct: 24  KQNLFTNIIKPQKDKINIKTDKIKFFLDNLFTEFSKFHDSCYPDG 68


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1877

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 103 LWSFKTTNTLLVASLENKLFSKH 171
           LW+ +  NT+LV+ L  KL   H
Sbjct: 200 LWAMEVCNTILVSDLPCKLIDLH 222


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 16/64 (25%), Positives = 25/64 (39%)
 Frame = -2

Query: 342 FGDGLVLHGLDNHSTRP*LYMLFPSPKQYEYSFEKALSSFVFKYSTSIFFTFICYCCMFR 163
           F D  +L       T P +Y LF +          A + F F+YS  +      + C+  
Sbjct: 417 FSDSTMLCATTLFKT-PQVYQLFENNDSVTRLLNFARARFPFEYSQFVLLLIPTFACLTS 475

Query: 162 KQFI 151
           KQ +
Sbjct: 476 KQLV 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,994,352
Number of Sequences: 5004
Number of extensions: 61375
Number of successful extensions: 166
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)