Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14c24
(782 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 318 8e-88
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 158 7e-40
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 144 1e-35
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 118 7e-28
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 95 1e-20
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 85 8e-18
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 79 5e-16
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 70 3e-13
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.7
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom... 27 3.0
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 27 4.0
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 5.3
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 26 7.0
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 7.0
SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8 |Schizosacch... 26 7.0
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom... 25 9.3
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 9.3
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 318 bits (780), Expect = 8e-88
Identities = 148/166 (89%), Positives = 155/166 (93%)
Frame = -2
Query: 781 RDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM 602
RDIKEKLCYVALDFEQE+ TAA SSSLEKSYELPDGQVITIGNERFR PEALFQPS LG+
Sbjct: 210 RDIKEKLCYVALDFEQELQTAAQSSSLEKSYELPDGQVITIGNERFRAPEALFQPSALGL 269
Query: 601 EACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKI 422
E GIHE TYNSIMKCDVDIRKDLY N V+SGGTTMYPGIADRMQKEI ALAPS+MK+KI
Sbjct: 270 ENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKI 329
Query: 421 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 284
+APPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 330 VAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 158 bits (384), Expect = 7e-40
Identities = 73/166 (43%), Positives = 108/166 (65%)
Frame = -2
Query: 781 RDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM 602
R+IKEK CYVA DF E+ + +Y+LPD Q IT+G E F PE LF P +G
Sbjct: 215 REIKEKCCYVASDFRSEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMGS 274
Query: 601 EACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKI 422
EA G+H + SI+ D+D+R LY+N VLSGG+T+ G +R E+ A++ ++KI
Sbjct: 275 EASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKI 334
Query: 421 IAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 284
A PER ++ W+GGSILASLSTF+++ I+ +EY ++ +++ R+ F
Sbjct: 335 YASPERMHNAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 144 bits (349), Expect = 1e-35
Identities = 73/169 (43%), Positives = 110/169 (65%), Gaps = 12/169 (7%)
Frame = -2
Query: 781 RDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGM 602
R++KEKLCYV+ D E + + ++ L ++Y LPDG+VI +G+ER+ CPE LFQP +G
Sbjct: 210 REMKEKLCYVSYDLELDHKLSEETTVLMRNYTLPDGRVIKVGSERYECPECLFQPHLVGS 269
Query: 601 EACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL--------A 446
E G+ E +++I DVDIRK LY VLSGG++MY G+ R++KEI L
Sbjct: 270 EQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGD 329
Query: 445 PSTM---KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 311
P+ + K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 330 PARLPNFKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 118 bits (285), Expect = 7e-28
Identities = 63/148 (42%), Positives = 84/148 (56%), Gaps = 11/148 (7%)
Frame = -2
Query: 721 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEAC---------GIHETTYN 569
A +SS K +E PDG G ERFR E LF PSF + G+HE Y
Sbjct: 271 AKASSRNPKPFEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQ 330
Query: 568 SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-STMKIKII-APPERKYS 395
SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S + + +
Sbjct: 331 SILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNA 390
Query: 394 VWIGGSILASLSTFQQMWISKQEYDESG 311
VW GGSILASL FQ +W+SKQEYDE G
Sbjct: 391 VWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 95.1 bits (226), Expect = 1e-20
Identities = 47/108 (43%), Positives = 71/108 (65%), Gaps = 6/108 (5%)
Frame = -2
Query: 592 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAP 413
GI + N I +CDVDIR L N ++ GGT++ G + R+Q E++ L P + ++KI A
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHAS 384
Query: 412 P---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGP---SIVHRKC 287
ER Y+ W+GGSIL+SL TF Q+WIS+QEY+E G +++ ++C
Sbjct: 385 GHVVERSYASWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 85.4 bits (202), Expect = 8e-18
Identities = 57/183 (31%), Positives = 86/183 (46%), Gaps = 20/183 (10%)
Frame = -2
Query: 778 DIKEKLCYVALDFEQEMATAASS--SSLEKSYELPD------------------GQVITI 659
+IKE +CYV+ +F+++M S LE Y LPD QV+ +
Sbjct: 217 EIKESVCYVSQNFKEDMEICHEKPRSKLEICYALPDYSTGKHGYIVRDINQKIEQQVLNL 276
Query: 658 GNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIA 479
NERF PE LF PS + + GI E S+ +I+ L N V GG +PG
Sbjct: 277 SNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFH 336
Query: 478 DRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 299
R+ E+ +LAP+ ++K+ P + W S + L + I++ EY E G +I+
Sbjct: 337 KRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRSEYSEHGANIM 395
Query: 298 HRK 290
RK
Sbjct: 396 TRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 79.4 bits (187), Expect = 5e-16
Identities = 53/180 (29%), Positives = 83/180 (46%), Gaps = 19/180 (10%)
Frame = -2
Query: 775 IKEKLCYVALDFEQEMATAASSSS--LEKSYELPDGQVITI--GNERFRCPEALFQPSFL 608
IKE+ CYV D +E + L+ + E G TI G ERF PE F P
Sbjct: 240 IKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIA 299
Query: 607 GME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPST-- 437
+ + E N + +D+RK LY N VLSGG+T++ +R+Q+++ +
Sbjct: 300 SSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIH 359
Query: 436 ------------MKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 293
+ + +I+ ++ +VW GGS+LA F +K +Y+E G SI R
Sbjct: 360 RSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 70.1 bits (164), Expect = 3e-13
Identities = 31/118 (26%), Positives = 62/118 (52%)
Frame = -2
Query: 652 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADR 473
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG PG+ R
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGGLGSLPGMETR 653
Query: 472 MQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIV 299
+++E+T++ P I + W G S + F+ ++++EY E GP +
Sbjct: 654 IKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTREEYLEKGPEYI 711
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 44.4 bits (100), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -2
Query: 538 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILA 368
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 367 SLSTFQQMWISKQEYDESGPSIVHRK 290
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -2
Query: 391 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 290
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPBC30B4.04c |sol1||SWI/SNF complex subunit
Sol1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 865
Score = 27.1 bits (57), Expect = 3.0
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = -3
Query: 774 SRRSCATSLLTSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNP 616
+R S A SS R P +P+AP+R PTV++S S A+ ++ P
Sbjct: 339 NRFSPAAPTTVSSERNAPPYPSAPTRPTP--PTVQTSSSAAPVDSAEPVAYQP 389
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = -3
Query: 744 TSSRRWPPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRS 610
TS R PP + + SL N P RSS E D V + P++
Sbjct: 47 TSIARRPPSTVGSQTGSLVNAPPKRSSGIERFDHVTGTAENRPQT 91
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 5.3
Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Frame = -3
Query: 726 PPLHPAA-PSRSLTNFPTVRSSPSET 652
PP HPA+ SR + ++ TV+SSPS T
Sbjct: 75 PPQHPASINSRRVASY-TVQSSPSRT 99
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = -3
Query: 735 RRWPPL--HPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWV 604
+ WP L HP P R P++ + P +T S + S +P S+V
Sbjct: 112 KHWPSLKPHPLPPKRVSLGIPSISNPPVDTVISDSP-TSPHPPSFV 156
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 466 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 356
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC3D6.11c |slx8||ubiquitin-protein ligase E3 Slx8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 269
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -3
Query: 717 HPAAPSRSLTNFPTVRSSPSETKDSV--AQRLSSNPR 613
HPA+ SLTN ++ + P+ D + S +PR
Sbjct: 131 HPASVENSLTNVNSIHAQPTTISDMIDLTDETSYDPR 167
>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 591
Score = 25.4 bits (53), Expect = 9.3
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +2
Query: 653 VSDGDDLTVGKFVRLLEGAAGCSGGHLLLEVKSDVAQLLLDV 778
V+ GDD++VGK L G G L+ ++ A L LD+
Sbjct: 135 VAVGDDVSVGKKRGALVGRRGLGATVLVHKIAGSAAALGLDL 176
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.4 bits (53), Expect = 9.3
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 4/121 (3%)
Frame = -2
Query: 745 DFEQEMATAASSSSLEKSY--ELPDGQ-VITIGNERFRCPEALFQPSFLG-MEACGIHET 578
D E++ SS+ + +Y + + Q ++T+ NE + E L S + E+
Sbjct: 108 DDHPEISGHVSSNDKDFAYFEDKSENQPLVTLPNENNQVIEPLSSQSCKSQLSTQNYSES 167
Query: 577 TYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKY 398
+ CD+D ++ + + T ++P AD I ++K A RKY
Sbjct: 168 DFGWNQLCDLD---PIFKSLAFTDDTNLFPAFADSEAALIMLKKREMTRVKHRAGRPRKY 224
Query: 397 S 395
S
Sbjct: 225 S 225
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,131,444
Number of Sequences: 5004
Number of extensions: 64373
Number of successful extensions: 233
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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