Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14c22
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 90 3e-19
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 38 0.001
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 38 0.001
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 37 0.002
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 34 0.017
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 34 0.022
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 33 0.030
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 32 0.068
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 32 0.090
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 31 0.12
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 29 0.48
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 0.84
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 28 1.1
SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|... 28 1.1
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 28 1.5
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 28 1.5
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 28 1.5
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 27 1.9
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 3.4
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 27 3.4
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 26 5.9
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 25 7.8
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 89.8 bits (213), Expect = 3e-19
Identities = 44/87 (50%), Positives = 59/87 (67%)
Frame = -3
Query: 695 VDEKFXXXXXXXXXXILQTXKVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNR 516
VDE+ +++ +V RD E G SK + F+++ SFE +DAAIEAMNNQ+ N+
Sbjct: 110 VDERVLYDTFSALGQLVKAPQVARD-ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNK 168
Query: 515 PISVSYAFKKDVKGERHGSAAERLLXA 435
PI+VSYAFK++ KGERHG AER L A
Sbjct: 169 PITVSYAFKREGKGERHGDIAERKLAA 195
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -3
Query: 647 LQTXKVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSY 498
++T K++ DPETG+ K + F F E + A+ +NN R I V +
Sbjct: 33 VKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIRVEF 82
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/47 (34%), Positives = 31/47 (65%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYA 495
++MR+P T S+ F F++F++ E + +AI+ +N+Q R ++V A
Sbjct: 131 RIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNVQKA 177
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 37.1 bits (82), Expect = 0.002
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -3
Query: 644 QTXKVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKK 486
++ K+M DP+T S+ + F+ F +A+ M Q +RPI V A K
Sbjct: 214 KSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK 266
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 34.3 bits (75), Expect = 0.017
Identities = 14/40 (35%), Positives = 26/40 (65%)
Frame = -3
Query: 617 ETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSY 498
E GN+K + F++F S E+++AAIE +N ++ + V +
Sbjct: 203 ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGH 242
Score = 31.1 bits (67), Expect = 0.16
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYA 495
+V RD T S +A++NF + E + A++ +N RP + ++
Sbjct: 110 RVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWS 156
Score = 29.1 bits (62), Expect = 0.64
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -3
Query: 602 KXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGE 471
+ F F+N+A+ E + A++ +N++ + + V A KK + E
Sbjct: 301 RGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREE 344
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 33.9 bits (74), Expect = 0.022
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = -3
Query: 632 VMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSY 498
++RD ETG SK FAF+ + ++ A++ M N +R + V +
Sbjct: 62 LVRDKETGKSKGFAFLKYEDQRSTVLAVDNMTNVKLLDRLVRVDH 106
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 33.5 bits (73), Expect = 0.030
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMNN 534
++ R+ +TG+SK +AFI F S + ++ E M+N
Sbjct: 135 RMSRNRKTGSSKHYAFIEFESLDVANVVAETMHN 168
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 32.3 bits (70), Expect = 0.068
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYA 495
+V+RD ETG+S +AFI F + E+ + A M N + I V ++
Sbjct: 274 QVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHVDFS 320
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 31.9 bits (69), Expect = 0.090
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVK 477
KV+RD E G ++ F F++F + A N +Y +RP+ +S A DVK
Sbjct: 60 KVVRDRE-GKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRA-TSDVK 110
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 31.5 bits (68), Expect = 0.12
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -3
Query: 614 TGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYA 495
TG SK F + F + + ++IE +N RP+ +SYA
Sbjct: 316 TGRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYA 355
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 29.5 bits (63), Expect = 0.48
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 611 GNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKD 483
G FAF+ +A++ A+ ++N RPI+V +A KD
Sbjct: 145 GRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKD 187
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 28.7 bits (61), Expect = 0.84
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = -2
Query: 378 YVDGACAN-GTTAAAHTIPDA--TTRTSNECATTTTIAYVSAAATAIFD 241
YV GA TT A + P T+ ++N ATTTT +A +TA+ D
Sbjct: 543 YVGGATKTPSTTKAVESTPSTLPTSASTNAAATTTTKKPKAAKSTAVRD 591
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 28.3 bits (60), Expect = 1.1
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGERHGSA 456
+++RD +G SK A++ F ++ AAI A++ + P+ V + + R +
Sbjct: 270 QIVRDKISGRSKGVAYVEFCHEDSVQAAI-ALSGKRLLGLPVIVQLTEAEKNRKAREAAE 328
Query: 455 AERLLXAQNP 426
R A+ P
Sbjct: 329 LARAASAEIP 338
>SPAC1F8.05 |isp3|meu4|sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 182
Score = 28.3 bits (60), Expect = 1.1
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Frame = -2
Query: 489 EGCERGEARISSREITXCTKS--TIACGQTSPVVCRCT---TYVDGACANGTTAAAHTIP 325
E CE+ + + ++ C +S CG+ + + R ++ DG C A T P
Sbjct: 78 ESCEKKKPKCCEKKKPKCCESEQNNGCGRRNQLARRLAFLGSFGDGDCDGCNEAFTVTGP 137
Query: 324 DATTRTSNECATTTTIAYVSAAAT 253
RT + T T A +AAAT
Sbjct: 138 ITYFRTCPDPLTGITPAVAAAAAT 161
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 27.9 bits (59), Expect = 1.5
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -3
Query: 620 PETGNSKXFAFINFA-SFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGER 468
P T SK + F++F+ FEA AI +N + + V+YA K++ + +R
Sbjct: 456 PSTEISKGYGFVSFSHPFEAVQ-AINTLNGVLFGKKRLFVNYAEKREDRKKR 506
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -3
Query: 617 ETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYA 495
E + +AF+ F E + A+E MN C+R I VS A
Sbjct: 41 EKAVDRSYAFVEFDEPEDAKEAMENMNYSILCDRCIRVSPA 81
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 27.9 bits (59), Expect = 1.5
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -3
Query: 617 ETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISV-SYAFKKDVKGERH 465
E + F F++FA+ E AIE MN + + + V S F++D + + +
Sbjct: 253 EQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQNDEN 304
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 27.5 bits (58), Expect = 1.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAI 549
+++RDP+T K FA+I F D A+
Sbjct: 300 RIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/50 (22%), Positives = 26/50 (52%)
Frame = -3
Query: 647 LQTXKVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSY 498
+++ +++ DPE+G K + F + + +A+ +NN R + V +
Sbjct: 31 VKSFQLVIDPESGQPKGYGFCEYHDPATAASAVRNLNNYDAGTRRLRVDF 80
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 647 LQTXKVMRDPETGNSKXFAFINFASFEASDAAIEA 543
+Q + +D ETG +K FAF+ S+ D AI+A
Sbjct: 228 IQRVYLAKDKETGRAKGFAFV---SYYDRDCAIKA 259
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 632 VMRDPETGNSKXFAFINF 579
VMRD TG S+ F F+ F
Sbjct: 194 VMRDSTTGRSRGFGFLTF 211
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/40 (25%), Positives = 21/40 (52%)
Frame = -3
Query: 647 LQTXKVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQY 528
++ ++M +TG K F F++F + A+E +N +
Sbjct: 254 IRRVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGHNSW 293
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,429,791
Number of Sequences: 5004
Number of extensions: 22465
Number of successful extensions: 85
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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