Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14c22
(697 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 143 1e-34
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 143 1e-34
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 42 3e-04
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 42 3e-04
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 42 3e-04
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 42 4e-04
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 42 4e-04
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 42 4e-04
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 42 4e-04
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 41 0.001
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 38 0.009
Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical pr... 36 0.021
Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical pr... 36 0.021
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 36 0.028
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 34 0.084
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 34 0.084
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 34 0.084
U41014-2|AAK32945.1| 182|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 33 0.26
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 33 0.26
Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical pr... 31 0.60
AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical ... 31 0.60
AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical ... 31 0.60
AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical ... 31 0.60
Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical pr... 30 1.4
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 30 1.4
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 30 1.4
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 30 1.4
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 30 1.4
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 30 1.4
Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical pr... 30 1.8
U46674-5|AAA85757.1| 708|Caenorhabditis elegans Hypothetical pr... 30 1.8
AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical... 29 2.4
Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical pr... 29 3.2
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 29 3.2
AF036700-1|AAB88364.1| 258|Caenorhabditis elegans Hypothetical ... 29 3.2
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical pr... 28 5.5
U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna b... 28 5.5
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 28 5.5
U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna bi... 28 5.5
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 28 5.5
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 28 5.5
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 28 5.5
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 28 5.5
Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical pr... 28 7.3
AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical ... 28 7.3
Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z48585-1|CAA88486.1| 154|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 27 9.7
U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical pr... 27 9.7
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 27 9.7
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 143 bits (346), Expect = 1e-34
Identities = 68/105 (64%), Positives = 79/105 (75%)
Frame = -3
Query: 695 VDEKFXXXXXXXXXXILQTXKVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNR 516
VDEK ILQ K+MRD ++G SK FAFINFASFEASD A+EAMN Q+ CNR
Sbjct: 111 VDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNR 170
Query: 515 PISVSYAFKKDVKGERHGSAAERLLXAQNPLSHADRPHQLFADAP 381
I+VSYAFK+D KGERHG+AAER+L AQNPL DRPHQ+F+D P
Sbjct: 171 AITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPHQVFSDVP 215
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 626 RDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYA 495
+D T N + F F+ F E +D AI+ +N +PI V+ A
Sbjct: 46 KDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKA 89
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 143 bits (346), Expect = 1e-34
Identities = 68/105 (64%), Positives = 79/105 (75%)
Frame = -3
Query: 695 VDEKFXXXXXXXXXXILQTXKVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNR 516
VDEK ILQ K+MRD ++G SK FAFINFASFEASD A+EAMN Q+ CNR
Sbjct: 121 VDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNR 180
Query: 515 PISVSYAFKKDVKGERHGSAAERLLXAQNPLSHADRPHQLFADAP 381
I+VSYAFK+D KGERHG+AAER+L AQNPL DRPHQ+F+D P
Sbjct: 181 AITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPHQVFSDVP 225
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 626 RDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYA 495
+D T N + F F+ F E +D AI+ +N +PI V+ A
Sbjct: 56 KDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKA 99
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = -3
Query: 647 LQTXKVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKD 483
+ + KVM D E G SK F F+ F E + +A+ MN++ C++P+ V+ A +K+
Sbjct: 283 ITSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKE 336
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = -3
Query: 647 LQTXKVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKD 483
+ + KVM D E G SK F F+ F E + +A+ MN++ C++P+ V+ A +K+
Sbjct: 280 ITSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKE 333
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/55 (36%), Positives = 34/55 (61%)
Frame = -3
Query: 647 LQTXKVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKD 483
+ + KVM D E G SK F F+ F E + +A+ MN++ C++P+ V+ A +K+
Sbjct: 343 ITSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKE 396
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKK 486
KV+RD T SK + F+++ E ++ AIE MN Q+ R I ++A +K
Sbjct: 52 KVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRK 101
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKK 486
KV+RD T SK + F+++ E ++ AIE MN Q+ R I ++A +K
Sbjct: 62 KVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRK 111
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKK 486
KV+RD T SK + F+++ E ++ AIE MN Q+ R I ++A +K
Sbjct: 165 KVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRK 214
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 41.9 bits (94), Expect = 4e-04
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKK 486
KV+RD T SK + F+++ E ++ AIE MN Q+ R I ++A +K
Sbjct: 133 KVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRK 182
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = -3
Query: 647 LQTXKVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKD 483
+ + KVM D E G SK F F+ F E + +A+ MN++ C++P+ V+ +K+
Sbjct: 343 ITSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIGQRKE 396
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = -3
Query: 647 LQTXKVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFK 489
+ +++ D ETG + FAFI FA ++ A+E MN RP+ V+ A K
Sbjct: 31 INNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQMNGAEFNGRPLRVNLANK 83
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 37.5 bits (83), Expect = 0.009
Identities = 17/51 (33%), Positives = 29/51 (56%)
Frame = -3
Query: 647 LQTXKVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYA 495
+++ K++RD TG S + F+N+ E + A+ + N N+ I VSYA
Sbjct: 68 IESCKLVRDKVTGQSLGYGFVNYVREEDALRAVSSFNGLRLQNKTIKVSYA 118
>Z50110-2|CAA90446.1| 566|Caenorhabditis elegans Hypothetical
protein F18H3.3b protein.
Length = 566
Score = 36.3 bits (80), Expect = 0.021
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = -3
Query: 647 LQTXKVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKD 483
+ + KVM D E G SK F F+ F E + AA+ MN++ +P+ V+ A +K+
Sbjct: 369 ITSAKVMVD-ENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKE 422
Score = 31.1 bits (67), Expect = 0.79
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISV 504
KV D E GNSK + F++F + ++ AIE +N ++ + V
Sbjct: 175 KVATDDE-GNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/59 (25%), Positives = 32/59 (54%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGERHGS 459
+V RD + S +A++NF ++ A++ MN + RP+ + ++ ++D R G+
Sbjct: 87 RVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWS-QRDPAARRAGN 144
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 632 VMRDPETGNSKXFAFINFASFEASDAAIEAMNN 534
VM D + G K F F+ FA +A+ A+E +N+
Sbjct: 269 VMTDAQ-GKPKGFGFVAFADQDAAGQAVEKLND 300
>Z50110-1|CAA90444.1| 692|Caenorhabditis elegans Hypothetical
protein F18H3.3a protein.
Length = 692
Score = 36.3 bits (80), Expect = 0.021
Identities = 20/55 (36%), Positives = 32/55 (58%)
Frame = -3
Query: 647 LQTXKVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKD 483
+ + KVM D E G SK F F+ F E + AA+ MN++ +P+ V+ A +K+
Sbjct: 369 ITSAKVMVD-ENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKE 422
Score = 31.1 bits (67), Expect = 0.79
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISV 504
KV D E GNSK + F++F + ++ AIE +N ++ + V
Sbjct: 175 KVATDDE-GNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYV 217
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/59 (25%), Positives = 32/59 (54%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVKGERHGS 459
+V RD + S +A++NF ++ A++ MN + RP+ + ++ ++D R G+
Sbjct: 87 RVCRDNTSRLSLGYAYVNFQQPADAERALDTMNFEVIHGRPMRIMWS-QRDPAARRAGN 144
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 632 VMRDPETGNSKXFAFINFASFEASDAAIEAMNN 534
VM D + G K F F+ FA +A+ A+E +N+
Sbjct: 269 VMTDAQ-GKPKGFGFVAFADQDAAGQAVEKLND 300
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFK 489
+++ D ETG + FAF+ F+ + A+E +N R + V+YA K
Sbjct: 36 RIVYDRETGRPRGFAFVEFSEEAGAQRAVEQLNGVAFNGRNLRVNYANK 84
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 34.3 bits (75), Expect = 0.084
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -3
Query: 623 DPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVS 501
DP TG+ K FAF+ + EA+ A E+MN Q R + V+
Sbjct: 136 DPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVN 176
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 34.3 bits (75), Expect = 0.084
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -3
Query: 623 DPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVS 501
DP TG+ K FAF+ + EA+ A E+MN Q R + V+
Sbjct: 136 DPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVN 176
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 34.3 bits (75), Expect = 0.084
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -3
Query: 623 DPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVS 501
DP TG+ K FAF+ + EA+ A E+MN Q R + V+
Sbjct: 136 DPATGHHKTFAFVEYEVPEAALLAQESMNGQMLGGRNLKVN 176
>U41014-2|AAK32945.1| 182|Caenorhabditis elegans Hypothetical
protein C06G1.2 protein.
Length = 182
Score = 33.5 bits (73), Expect = 0.15
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Frame = -2
Query: 480 ERGEARISSREITXCTKSTIACGQTSPVVCRCTTYVDGA-CANGTTAAAHTIPDA-TTRT 307
E I T T +T+ +T+ V TT V+ TT A T +A TT T
Sbjct: 33 EGSGVEIEKASTTEATTTTVV--ETTTTVDSTTTEVETTPTTEATTTVAETTTEAETTTT 90
Query: 306 SNECATTTTIAYVSAAAT 253
+ E TTTT A + AAT
Sbjct: 91 TVESTTTTTEATTTEAAT 108
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMN 537
KV D T SK F F+++ + +S AAI AMN
Sbjct: 459 KVFVDRATNQSKCFGFVSYDNIHSSQAAITAMN 491
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMN 537
KV D T SK F F+++ + +S AAI AMN
Sbjct: 459 KVFVDRATNQSKCFGFVSYDNIHSSQAAITAMN 491
>Z68297-5|CAC70081.1| 394|Caenorhabditis elegans Hypothetical
protein F11A10.7 protein.
Length = 394
Score = 31.5 bits (68), Expect = 0.60
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = -3
Query: 647 LQTXKVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKK 486
++ +++RD +TG K FAF+NF + A+ +M R + ++ KK
Sbjct: 273 VEAVRIVRDKDTGKGKGFAFVNFKQDSSVSLAL-SMETIKMEKRDLRITKVMKK 325
>AF098501-6|AAL38960.1| 315|Caenorhabditis elegans Hypothetical
protein H28G03.1b protein.
Length = 315
Score = 31.5 bits (68), Expect = 0.60
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = -3
Query: 632 VMRDPETGNSKXFAFINFASFEASDAAI 549
V+RDP T +S+ F F+ FAS ++++A+
Sbjct: 80 VIRDPNTKHSRGFGFVTFASIFSAESAM 107
>AF098501-5|AAM69104.1| 335|Caenorhabditis elegans Hypothetical
protein H28G03.1c protein.
Length = 335
Score = 31.5 bits (68), Expect = 0.60
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = -3
Query: 632 VMRDPETGNSKXFAFINFASFEASDAAI 549
V+RDP T +S+ F F+ FAS ++++A+
Sbjct: 100 VIRDPNTKHSRGFGFVTFASIFSAESAM 127
>AF098501-4|AAL38959.1| 336|Caenorhabditis elegans Hypothetical
protein H28G03.1a protein.
Length = 336
Score = 31.5 bits (68), Expect = 0.60
Identities = 12/28 (42%), Positives = 21/28 (75%)
Frame = -3
Query: 632 VMRDPETGNSKXFAFINFASFEASDAAI 549
V+RDP T +S+ F F+ FAS ++++A+
Sbjct: 101 VIRDPNTKHSRGFGFVTFASIFSAESAM 128
>Z97628-2|CAB10726.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = -3
Query: 647 LQTXKVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYA 495
+ +++RD +G+S +AFI F + ++ + A M+N +R I V ++
Sbjct: 267 INNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFS 317
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYA 495
+++ D ETG + FAF+ F A+ A++ N R + V+ A
Sbjct: 34 RIVCDRETGRPRGFAFVEFTEEAAAQRAVDQFNGVDFNGRALRVNLA 80
>Z81080-5|CAB03088.2| 427|Caenorhabditis elegans Hypothetical
protein F39H2.2a protein.
Length = 427
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = -3
Query: 647 LQTXKVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYA 495
+ +++RD +G+S +AFI F + ++ + A M+N +R I V ++
Sbjct: 267 INNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFS 317
>Z81080-2|CAD56584.1| 358|Caenorhabditis elegans Hypothetical
protein F39H2.2b protein.
Length = 358
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/51 (27%), Positives = 29/51 (56%)
Frame = -3
Query: 647 LQTXKVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYA 495
+ +++RD +G+S +AFI F + ++ + A M+N +R I V ++
Sbjct: 198 INNCEIVRDRRSGDSLQYAFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFS 248
>Z81044-5|CAE17706.2| 460|Caenorhabditis elegans Hypothetical
protein C30H6.11 protein.
Length = 460
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/64 (28%), Positives = 25/64 (39%)
Frame = -2
Query: 444 TXCTKSTIACGQTSPVVCRCTTYVDGACANGTTAAAHTIPDATTRTSNECATTTTIAYVS 265
T T +T T+P T A T+ T P TT+T+ + TTTT +
Sbjct: 220 TTTTPTTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTTTPTTT 279
Query: 264 AAAT 253
T
Sbjct: 280 PTTT 283
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/55 (29%), Positives = 19/55 (34%)
Frame = -2
Query: 444 TXCTKSTIACGQTSPVVCRCTTYVDGACANGTTAAAHTIPDATTRTSNECATTTT 280
T T +T T+ TT T T+P TT T TTTT
Sbjct: 178 TTTTPTTTTTTPTTTTTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTT 232
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 632 VMRDPETGNSKXFAFINFASFEASDAAIE 546
VMRDP T S+ F F+ F+ DAA++
Sbjct: 54 VMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 632 VMRDPETGNSKXFAFINFASFEASDAAIE 546
VMRDP T S+ F F+ F+ DAA++
Sbjct: 16 VMRDPTTKRSRGFGFVTFSGKTEVDAAMK 44
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 632 VMRDPETGNSKXFAFINFASFEASDAAIE 546
VMRDP T S+ F F+ F+ DAA++
Sbjct: 16 VMRDPTTKRSRGFGFVTFSGKTEVDAAMK 44
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 632 VMRDPETGNSKXFAFINFASFEASDAAIE 546
VMRDP T S+ F F+ F+ DAA++
Sbjct: 54 VMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 632 VMRDPETGNSKXFAFINFASFEASDAAIE 546
VMRDP T S+ F F+ F+ DAA++
Sbjct: 54 VMRDPTTKRSRGFGFVTFSGKTEVDAAMK 82
>Z35663-4|CAA84724.1| 307|Caenorhabditis elegans Hypothetical
protein T04A8.6 protein.
Length = 307
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDV--KGERHG 462
+V R+ TGN K +A++ F + ++ A E+MN + + + K ++ K RHG
Sbjct: 62 RVARNRRTGNHKGWAYVGFDNKAVAEIAAESMNGYLMFEQRLGCT-VMKPELIPKAMRHG 120
>U46674-5|AAA85757.1| 708|Caenorhabditis elegans Hypothetical
protein T26A8.1 protein.
Length = 708
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 375 VDGACANGTTAAAHTIPD-ATTRTSNECATTTT 280
+DG+ N T + T P +TT TS+ +TTTT
Sbjct: 315 IDGSTGNSTGSTVETTPSTSTTTTSSTTSTTTT 347
>AF047659-10|AAC04430.1| 798|Caenorhabditis elegans Hypothetical
protein K07H8.10 protein.
Length = 798
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKKDVK 477
K++ NSK AFI F + E + AA N N + V YA ++ K
Sbjct: 665 KILHASGQPNSKKRAFITFGTVEDAQAAFAKSNGLKVNNHLVDVFYARHQETK 717
>Z77654-1|CAB01127.1| 114|Caenorhabditis elegans Hypothetical
protein C50B8.1 protein.
Length = 114
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 647 LQTXKVMRDPETGNSKXFAFINFASFEASDAAIE 546
+Q+ + DP+TG + FA I F S + ++ AIE
Sbjct: 51 IQSVNMFYDPDTGLHRGFASITFDSKDGANKAIE 84
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 623 DPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYA 495
D E+G + F F+ F E + AI+ MN + I V++A
Sbjct: 45 DYESGKHRGFGFVEFDMAEDAAMAIDNMNESELFGKTIRVNFA 87
>AF036700-1|AAB88364.1| 258|Caenorhabditis elegans Hypothetical
protein M04G7.1 protein.
Length = 258
Score = 29.1 bits (62), Expect = 3.2
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Frame = -2
Query: 447 ITXCTKSTIACGQTSPVVCRCTTYVDGACANGTTAAA-------HTIPDATTRTSNECAT 289
+T C T +C Q V Y C+ AAA +T+PD TTR N C+
Sbjct: 156 LTDCANRTASC-QDIDFVDMMALYCPRTCSLCLWAAATKIPNCGNTLPDCTTR-GNYCSA 213
Query: 288 TTTIAY 271
T+ AY
Sbjct: 214 TSVSAY 219
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 632 VMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSY 498
++RD +TG SK FAF+ + ++ A++ N R I V +
Sbjct: 69 LIRDKDTGKSKGFAFLCYKDQRSTILAVDNFNGISLHKRMIRVDH 113
>Z69792-3|CAA93666.1| 284|Caenorhabditis elegans Hypothetical
protein F40E10.5 protein.
Length = 284
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 384 TTYVDGACANGTTAAAHTIPDATTRTSNECATTTTIAYVS 265
TT TT A T+P+A + T+ + TTT A ++
Sbjct: 215 TTTTTTTTTTTTTTEAPTMPEAVSSTTEQSTTTTAAAIIA 254
>U80455-2|AAB37882.2| 420|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform b protein.
Length = 420
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMN 537
KV D T SK F F+++ + +++ AI AMN
Sbjct: 365 KVFIDKVTNLSKCFGFVSYENAQSATNAISAMN 397
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMN 537
KV D T SK F F+++ + +++ AI AMN
Sbjct: 529 KVFIDKVTNLSKCFGFVSYENAQSATNAISAMN 561
>U55857-7|AAA98033.1| 217|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 3 protein.
Length = 217
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = -3
Query: 608 NSKXFAFINFASFEASDAAIEAMNN-QYXCNRPISVSYAFK 489
N+K FAFI + S + S+ A +A++N + + I+V +A K
Sbjct: 177 NTKDFAFIEYESEDLSEPARQALDNFRITPTQQITVKFASK 217
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMN 537
KV D T SK F F+++ + +++ AI AMN
Sbjct: 529 KVFIDKVTNLSKCFGFVSYENAQSATNAISAMN 561
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMN 537
KV D T SK F F+++ + +++ AI AMN
Sbjct: 458 KVFIDKVTNLSKCFGFVSYENAQSATNAISAMN 490
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMN 537
KV D T SK F F+++ + +++ AI AMN
Sbjct: 529 KVFIDKVTNLSKCFGFVSYENAQSATNAISAMN 561
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/46 (26%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -3
Query: 635 KVMRDPETGNSKXFAFINFASFEASDAAIEAMN-NQYXCNRPISVS 501
++M DP +G S+ +AF+ + + E + AA + + ++ +P+ V+
Sbjct: 230 RLMMDPMSGASRGYAFVTYCNKEDAAAAAKTYDGHEISTGKPLKVN 275
>Z72504-6|CAA96604.2| 906|Caenorhabditis elegans Hypothetical
protein C29E6.4 protein.
Length = 906
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/40 (25%), Positives = 24/40 (60%)
Frame = -2
Query: 360 ANGTTAAAHTIPDATTRTSNECATTTTIAYVSAAATAIFD 241
++ T + AH +P+A T++SN+ + +T++ + + D
Sbjct: 518 SSSTRSRAHALPNAETKSSNKSSESTSLLPIDPELVGLED 557
>AF077538-1|AAC64622.1| 1275|Caenorhabditis elegans Hypothetical
protein H02F09.3 protein.
Length = 1275
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/69 (24%), Positives = 34/69 (49%)
Frame = -2
Query: 459 SSREITXCTKSTIACGQTSPVVCRCTTYVDGACANGTTAAAHTIPDATTRTSNECATTTT 280
S +T + S+ A TSP TT D + +G+T + T +++ T + + ++
Sbjct: 520 SGTTVTLPSGSSTATAGTSPQASTVTTVTDISTVSGSTVTSQT-AESSLSTESPTSAGSS 578
Query: 279 IAYVSAAAT 253
I+ VS ++
Sbjct: 579 ISTVSTVSS 587
>Z93391-7|CAB07685.3| 405|Caenorhabditis elegans Hypothetical
protein W04G5.9 protein.
Length = 405
Score = 27.5 bits (58), Expect = 9.7
Identities = 24/70 (34%), Positives = 28/70 (40%)
Frame = -2
Query: 462 ISSREITXCTKSTIACGQTSPVVCRCTTYVDGACANGTTAAAHTIPDATTRTSNECATTT 283
++ R T T+A +TSP R TT TT A T T TS TTT
Sbjct: 161 VTPRTTRSSTARTVATTKTSPSTLRTTTK-----PPTTTTIATTRITTKTTTSPPPFTTT 215
Query: 282 TIAYVSAAAT 253
SAA T
Sbjct: 216 VTTTTSAART 225
>Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical
protein F56H9.6 protein.
Length = 245
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/61 (27%), Positives = 23/61 (37%)
Frame = -2
Query: 459 SSREITXCTKSTIACGQTSPVVCRCTTYVDGACANGTTAAAHTIPDATTRTSNECATTTT 280
+S T T + T+P TT TT + T TT T+ TTTT
Sbjct: 68 TSTTSTTTTTTPTTTTTTTPTTTTSTTSTTTTTTPTTTTSTTTTTTTTTTTATPTTTTTT 127
Query: 279 I 277
+
Sbjct: 128 M 128
>Z48585-1|CAA88486.1| 154|Caenorhabditis elegans Hypothetical
protein ZK673.1 protein.
Length = 154
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -2
Query: 444 TXCTKSTIACGQT--SPVVCRCTTYVDGACANGTTAAAHTIPDATTRTSN 301
T CT+ T C +P++ + G C G+TAA D++T +N
Sbjct: 73 TDCTQYTSLCSNAKYTPLLQQFCPKTCGFCGGGSTAAPVQCVDSSTNCAN 122
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -3
Query: 632 VMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKK 486
VMRDP T ++ F FI F + D + ++ + I AF K
Sbjct: 76 VMRDPATKRARGFGFITFVDPSSVDKVLNNREHELD-GKKIDPKVAFPK 123
>U41992-4|AAL02506.2| 876|Caenorhabditis elegans Hypothetical
protein F32E10.3 protein.
Length = 876
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = -2
Query: 468 ARISSREITXCTKSTIACGQTSPVVCRCTTYVDGACANGTTAAAHTIPDATTRTSNECAT 289
A++ +++ T K T+ Q + V TT + TTAA T P T T+ E +
Sbjct: 729 AKLEAKQHTEDEKVTVETKQETAVTPAPTT----SEKTSTTAAPSTKPAEETTTTTEAPS 784
Query: 288 TTT 280
TTT
Sbjct: 785 TTT 787
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -3
Query: 632 VMRDPETGNSKXFAFINFASFEASDAAIEAMNNQYXCNRPISVSYAFKK 486
VMRDP T ++ F FI F + D + ++ + I AF K
Sbjct: 76 VMRDPATKRARGFGFITFVDPSSVDKVLNNREHELD-GKKIDPKVAFPK 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,078,385
Number of Sequences: 27780
Number of extensions: 133974
Number of successful extensions: 535
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 532
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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