Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14c20
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A10.02 |cdr2||GIN4 family protein kinase Cdr2|Schizosaccha...    29   0.82 
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    27   2.5  
SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces pombe...    27   3.3  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       27   3.3  
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    26   4.4  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    26   4.4  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   5.8  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   7.6  

>SPAC57A10.02 |cdr2||GIN4 family protein kinase
           Cdr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 146 PVCAMGTFLSPLTASGTFLGAVMVSTP-SDDSRDSTVSGAAP 268
           P  +   FL+P+T SGTF  +   + P S   R +T S A P
Sbjct: 384 PATSASPFLTPVTTSGTFNYSFNATNPQSILQRPATTSSAVP 425


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 513 LLNREYYRPWRHLAAAARDVGSSIKVDKDKFQV 415
           LLN  Y + W+ L++  + +  S   DKD  Q+
Sbjct: 358 LLNGRYKKRWQQLSSEVKKISDSASSDKDVKQL 390


>SPAC4F8.04 |||Brix domain protein Rpf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 306

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = -2

Query: 254 RLWNRDCHQTGYSPSLRRGRCLTPSRERERCPSHRPVPFARRSRIRVKKPTRRKSRKVYE 75
           ++ N+   Q  Y  +L +       R +ER       P  +R R+    P   +S++VY+
Sbjct: 3   KIKNKIVRQQQYMKALHQKNKDKLERRKERAKEEEKDPEKKRLRLSENIPATIESKRVYD 62

Query: 74  E 72
           E
Sbjct: 63  E 63


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = -2

Query: 212 SLRRGRCLTPSRERERCPSHRPVPFARRSRIRVKKP 105
           S RR R   P R R R  S RP P A  +      P
Sbjct: 198 SRRRSRSRRPGRSRSRRRSRRPSPSAEHNSAEENDP 233


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = -1

Query: 483 RHLAAAARDVGSSIKVDKDKFQVNLDVQHFAPEEI 379
           +H+     +V   ++VDK+K  ++L  +  +PE++
Sbjct: 61  KHIRVGRNEVVVVLRVDKEKGYIDLSKRRVSPEDV 95


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +2

Query: 164 TFLSPLTASGTFLGAVMVSTPSDDS-RDSTVSGAAP 268
           +F+S +TA  T  GAV+V  P+  +  ++ VSG+ P
Sbjct: 783 SFMSTITAHDTSSGAVIVVEPTAGTVTETIVSGSIP 818


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 267 GAAPETVESRLSSDGVLTITAPRKVPD 187
           G  P T+ES ++ D  L I   RK+ D
Sbjct: 452 GTDPSTLESDIAEDAALQIDEVRKISD 478


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 490 SVVFPVQQRPGSDTXXIIWC*GKAKMLVQQ 579
           + VF + Q PG+D   I  C G  ++LV +
Sbjct: 661 TAVFAIMQNPGNDWDMIRACIGSKEILVPE 690


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,262
Number of Sequences: 5004
Number of extensions: 47256
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)