Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14c13
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    31   0.22 
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   2.7  
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su...    27   3.6  
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc...    27   3.6  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   3.6  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    26   4.8  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    26   4.8  
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces...    26   6.3  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   8.4  

>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 21/83 (25%), Positives = 37/83 (44%)
 Frame = -3

Query: 601 VEMLPAKLFHSPAXSLPQTLAPQPTTGKFKNDCSYKNIKSTVSKTSIIGHKSIGKIPSKN 422
           ++  P +L+H    S+   L  Q     F N  + KN+   VSK+ ++       I   +
Sbjct: 115 IQSFPTRLYHICRNSIKSILQFQ----NFSNIFAKKNLFPKVSKSDVLLFPRDAFISQAS 170

Query: 421 QLQHIYNQYKGSQSHTQQNVQEH 353
            L  I ++Y+G+    +Q   EH
Sbjct: 171 LLSLIRHEYRGNAKRLRQLRDEH 193


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 23/110 (20%), Positives = 46/110 (41%)
 Frame = -3

Query: 580 LFHSPAXSLPQTLAPQPTTGKFKNDCSYKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYN 401
           +F   +   P + +P     K  ++ S +   S+V K S + +      PSK+       
Sbjct: 90  MFEESSKQSPPSKSPTKNPSKKSSNNSSRRSSSSVGKLSNVSNMQSS--PSKDPFV---- 143

Query: 400 QYKGSQSHTQQNVQEHLNVTSASEGRLRTAQTDVHHQALVEKEGGDVLRN 251
               SQ + ++++         SEG L++ Q++    ++ EK+  D   N
Sbjct: 144 ----SQDYEKESISSSQFSKKYSEGSLKSQQSNTRSNSVHEKQNTDHASN 189


>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 446

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -3

Query: 358 EHLNVTSASEGRLRTAQTDVHHQALVEKEGGDVLRNNPLQP--KRLEATFEQGGDASINK 185
           +H+ +       +R +  + H+Q++++   G V  N+P+ P   +L+   +   +  + K
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQSILKFIKGTVAENSPIVPISAQLKYNIDAILEYIVKK 222

Query: 184 LGVPEKSETT 155
           + +P +  TT
Sbjct: 223 IPIPVRDFTT 232


>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1238

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 13/61 (21%), Positives = 30/61 (49%)
 Frame = -3

Query: 223 ATFEQGGDASINKLGVPEKSETTKSAKCRNGLQDMVYTSYPTSTAWSFHGNRGPPVTANQ 44
           ++    GDAS N++ VP+KS    +A     L    ++++ + ++     N   P+ + +
Sbjct: 712 SSISSDGDASSNRMAVPDKSPFVHAAPNSKALTKDSFSTHISVSSLLHSDNEISPIDSTR 771

Query: 43  R 41
           +
Sbjct: 772 K 772


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = -3

Query: 568 PAXSLPQTLAPQPTTGKFKNDCSYKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKG 389
           P  SLP+ ++ QPT  K     S  ++ S +SKT  +       I   N+++H+      
Sbjct: 712 PLSSLPEEVSRQPTDDK-GEQVSNADVDSGLSKTERL------TIQQTNEIKHVPTNTTS 764

Query: 388 SQSHTQQ--NVQEHLNVTSA 335
           S    QQ  N  E   +T+A
Sbjct: 765 SVKLPQQPSNEDEKERITTA 784


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1250

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 583  SLEAFPPADLRYYIRGVTDVSTYLLEISAL*YFLAEXPGLFCLKYI 720
            +L+  PP D+ Y   GVT  +T     S +   L E PG+  +K I
Sbjct: 1090 ALQGLPPFDVEYEFNGVTQHAT---SDSHILTRLIELPGVVAMKSI 1132


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 416 QLILAGNFPYRLVTNYR 466
           +LI+ GN P+RLV  YR
Sbjct: 615 RLIILGNSPFRLVVQYR 631


>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 527 RWLRC*RLRKTXGRAVEEFRWKHFHR 604
           +W+RC   +    +  E F W+H HR
Sbjct: 310 KWIRCQGRKDVSVKIPEIFWWRHAHR 335


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
 Frame = -3

Query: 637 QSHREYNTLGQPVEMLPAKLFHSPAXSLPQTLAPQPTTGKFKNDCSYKNIKSTVSKTSII 458
           Q+H++  T  QP ++       SP    PQ L+P+P  G  K+     ++  T  +T + 
Sbjct: 375 QTHKK--TSSQPSDLSSFAQLLSP----PQVLSPKPNGGGHKSFRHSHSLSETSQQTLVP 428

Query: 457 GHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEGRL--RTAQTDVHHQAL 284
              S G+        H     +  +    + ++E L   +A   +L  R + +   +   
Sbjct: 429 SLGSNGEYHLPTN-DHSSTPAQSERDSDVEELREQLENLTALTKKLSERLSSSTFDNSKF 487

Query: 283 VEKEGGDVLRNNPLQ 239
           +  E  D +R+  L+
Sbjct: 488 IRTEDKDTVRSAKLE 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,029,647
Number of Sequences: 5004
Number of extensions: 63254
Number of successful extensions: 187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)