Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14c13
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532... 29 2.9
10_03_0014 - 7060587-7060730,7060813-7060981,7061444-7061613,706... 29 2.9
12_01_0250 - 1852619-1854124,1855224-1856153,1856293-1856409,185... 29 3.8
11_01_0370 + 2814888-2814979,2815450-2815620,2815753-2815834,281... 29 3.8
05_07_0085 - 27591909-27592152,27592232-27592402,27592485-275926... 29 3.8
03_02_0502 - 8934646-8934834,8934974-8935121,8935228-8935304,893... 29 3.8
12_01_0800 - 7331444-7331539,7331617-7331742,7331830-7331907,733... 29 5.0
03_06_0501 - 34380155-34380637,34380961-34381029,34382206-343822... 29 5.0
05_07_0029 - 27163121-27163818,27163992-27164067,27164184-271658... 28 6.6
03_02_0855 + 11809135-11809348,11809425-11809501,11809625-118096... 28 6.6
08_02_1139 - 24638824-24639325,24639528-24639713,24639801-246405... 28 8.7
>11_01_0657 +
5322295-5323367,5323436-5323555,5323743-5323791,
5323968-5324084,5324200-5324268,5324394-5324488,
5325183-5325521,5327043-5327084,5327814-5327907,
5328121-5328190,5328719-5329677
Length = 1008
Score = 29.5 bits (63), Expect = 2.9
Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 2/138 (1%)
Frame = -3
Query: 493 NIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEGRLRT 314
N+K + + S K+ + Q + Q H Q +++ +A++ L
Sbjct: 218 NVKIEPQQLQALRSLSAVKMEQPTSDPSAFLQQQQQQQHLLQLTKQNPQAAAAAQLNLLQ 277
Query: 313 AQTDVHHQALVEKEGGDVLRNNPLQPKRLEATFEQGGDASINKLGVPEKSETTKSAKCRN 134
Q + Q +++ +L+N PLQ +L+ + S+N + P KS + C
Sbjct: 278 QQRILQMQQQQQQQQQQILKNLPLQRNQLQQQ-QLLRQQSLN-MRTPGKSAPYEPGTCAK 335
Query: 133 GLQDMVY--TSYPTSTAW 86
L +Y + P ++ W
Sbjct: 336 RLTHYMYHQQNRPQASFW 353
>10_03_0014 -
7060587-7060730,7060813-7060981,7061444-7061613,
7061701-7061879,7061978-7062043,7062394-7062567,
7062669-7062967,7063243-7063343,7063600-7063684,
7063797-7063947,7064267-7064451,7065599-7065786
Length = 636
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +1
Query: 259 THH-HLLSQPELDGGHQFAQFVNVLPKQMSHSDVLEHSAEYETASLCTDYKYAAT 420
THH H ++ P + +F +VL +S S++ EH+ +YE S T AT
Sbjct: 94 THHQHHITVPTITVSDSDLKFTHVL-YNLSPSELYEHAIKYEKGSFITSSGALAT 147
>12_01_0250 -
1852619-1854124,1855224-1856153,1856293-1856409,
1856777-1857157
Length = 977
Score = 29.1 bits (62), Expect = 3.8
Identities = 24/104 (23%), Positives = 46/104 (44%)
Frame = -1
Query: 405 IISTKARSLILSRMFKNI*M*HLLRKDVYELRKLMSTIKLWLRKKVVMCCAIIHYSLKGL 226
++S KA SL +S F ++ + R + + L ST ++ V + CA+ + L +
Sbjct: 222 LLSKKAESLEVSFRFISV----IGRLETLDFSNLRSTFQIKFGVAVAISCALQMHRLLLV 277
Query: 225 RQPSSKVVMLQLINLVSLKRAKQLRVPNVGTAYKIWYIRLTQPR 94
S + QL + + + KQ+ A + Y++ PR
Sbjct: 278 DDNLSSTSIAQLQKMANFTQPKQMASSVCSPASTLNYLQTPSPR 321
>11_01_0370 +
2814888-2814979,2815450-2815620,2815753-2815834,
2816275-2816316,2816397-2816456,2816817-2816913,
2817382-2819024,2819155-2819256,2819369-2819509,
2819625-2819750,2819935-2820096
Length = 905
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/48 (33%), Positives = 22/48 (45%)
Frame = -3
Query: 202 DASINKLGVPEKSETTKSAKCRNGLQDMVYTSYPTSTAWSFHGNRGPP 59
DA I+ + K + SA C+ L D+ TSY S G+ G P
Sbjct: 579 DAVISNVNPAGKQSSDDSASCKTSLTDIPATSYLCSKEMKQCGSSGVP 626
>05_07_0085 -
27591909-27592152,27592232-27592402,27592485-27592648,
27592775-27593317,27593399-27593860,27593939-27594672,
27594761-27594890
Length = 815
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -3
Query: 544 LAPQPTTGKFKNDCSYKNIKSTVSKTSIIGH 452
LAP+P GK N K + ++SI+GH
Sbjct: 609 LAPEPKRGKAATSMPLSNAKRKMRESSIVGH 639
>03_02_0502 -
8934646-8934834,8934974-8935121,8935228-8935304,
8935427-8935497,8935594-8935680,8935852-8936316,
8936406-8936880
Length = 503
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 121 MVYTSYPTSTAWS-FHGNRGPPVTANQRYK 35
+VY P T + HGN+GPP+ QR+K
Sbjct: 298 LVYEFVPNKTLDTHLHGNKGPPLDWQQRWK 327
>12_01_0800 -
7331444-7331539,7331617-7331742,7331830-7331907,
7332515-7332747,7332832-7332871,7333016-7333070,
7333158-7333345,7333416-7333475,7333686-7333769,
7334817-7334903,7335178-7335246,7335354-7335410
Length = 390
Score = 28.7 bits (61), Expect = 5.0
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = -3
Query: 448 SIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEGRLRTAQTDVHHQALVEKEG 269
S+ I KN +H + G+ ++ + S+SEG +Q D HH+ +++
Sbjct: 155 SLNMITGKNSTEH--GKTSGASANGAISQSGESGSESSSEGSEANSQNDSHHKESGQEQD 212
Query: 268 GDV 260
G+V
Sbjct: 213 GEV 215
>03_06_0501 -
34380155-34380637,34380961-34381029,34382206-34382229,
34382622-34382786
Length = 246
Score = 28.7 bits (61), Expect = 5.0
Identities = 22/96 (22%), Positives = 40/96 (41%)
Frame = -3
Query: 499 YKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEGRL 320
Y+ I S + ++ G + I K ++I + + H N+ + + L
Sbjct: 105 YRAITSAYYRGAV-GALLVYDITKKQTFENIQRWLRELRDHADSNIVIMMVGNKSDLNHL 163
Query: 319 RTAQTDVHHQALVEKEGGDVLRNNPLQPKRLEATFE 212
R+ + QAL EKEG L + L+ +E F+
Sbjct: 164 RSVPEE-DGQALAEKEGLSFLETSALEALNVEKAFQ 198
>05_07_0029 -
27163121-27163818,27163992-27164067,27164184-27165896,
27166285-27166364,27166516-27166684
Length = 911
Score = 28.3 bits (60), Expect = 6.6
Identities = 35/153 (22%), Positives = 65/153 (42%), Gaps = 6/153 (3%)
Frame = -3
Query: 523 GKFKNDCSYKNIKSTVSKTSIIGHKSIGKIPSKNQL----QHIYNQYKGSQSHTQQNVQE 356
G +++CSY +I ++ K GH G+ + NQL Q ++++ K + ++
Sbjct: 142 GGHRSECSYGSIYNSHQKQQKPGHIRDGRHDNGNQLDADAQPVWSR-KHAAHKLASPIKS 200
Query: 355 HLNVTSASEGRLRTAQTDVHHQALVEKEGGDVLRNNPLQPKRLEATFEQGGDASINKLGV 176
+V+S ++ RL A V L + R L+ R ++ Q +++
Sbjct: 201 PRSVSSRNKVRLIEAAVKVLEPGLQSRHHHQARRQARLE-YRCNSSDVQSAAEAMHDFSD 259
Query: 175 PEKSETTKSAKCRNGLQDMVYTSYPTSTA--WS 83
E R+G Q++ TS ST+ WS
Sbjct: 260 QFAREMCDVDASRSGAQNVGATSLHNSTSNQWS 292
>03_02_0855 +
11809135-11809348,11809425-11809501,11809625-11809682,
11809753-11809840,11809910-11809979,11810171-11810728
Length = 354
Score = 28.3 bits (60), Expect = 6.6
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
Frame = -3
Query: 574 HSPAXSLPQTLAPQPTTGKFKND--CSYKNIKSTVSKTSIIGHKSIGKIPSKNQL--QHI 407
H L + L Q G KN C+ K + + S + H ++G +K+ + +
Sbjct: 95 HLQKYRLSKNLHAQANAGNVKNALVCTTATEKPSEANGSPVSHLNLGTQTNKSVHIGEAL 154
Query: 406 YNQYKGSQS-HTQQNVQEHLNVTSASEGRLRTAQTDVHHQALVEKEGGDV 260
Q + + H Q VQ HL + ++G+ + + + L ++ G V
Sbjct: 155 QMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLAKQNAGSV 204
>08_02_1139 -
24638824-24639325,24639528-24639713,24639801-24640543,
24640709-24640870,24641141-24641500
Length = 650
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 604 PVEMLPAKLFHSPAXSLPQTLA-PQPTTGKFKNDCSYKNIKSTVSK 470
P + P +L SP LP +A P PTTGK + N+K ++ K
Sbjct: 101 PPGVSPRELLESPVF-LPNAIAQPSPTTGKLP-FLMHSNVKPSIPK 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,749,884
Number of Sequences: 37544
Number of extensions: 412001
Number of successful extensions: 1127
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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