Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14c13
         (729 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498094-1|AAM44808.1|  592|Homo sapiens amphiphysin I variant C...    34   0.45 
AC004381-3|AAC31669.1|  426|Homo sapiens Unknown gene product pr...    31   5.6  

>AF498094-1|AAM44808.1|  592|Homo sapiens amphiphysin I variant CT4
           protein.
          Length = 592

 Score = 34.3 bits (75), Expect = 0.45
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +1

Query: 328 LPKQMSHSDVLEHSAEYETASLCTDYKYAATDSCWEFS 441
           L    +HSDV+EH  E +   L  D +  A  SCWE S
Sbjct: 389 LDNSWTHSDVVEHKEELKVDLLAGDCREQAIASCWEQS 426


>AC004381-3|AAC31669.1|  426|Homo sapiens Unknown gene product
           protein.
          Length = 426

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 18/75 (24%), Positives = 32/75 (42%)
 Frame = -3

Query: 502 SYKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEGR 323
           S  N+KS++   +     S+G++ S      IY Q +G   H   N +   +   +    
Sbjct: 55  SLHNVKSSLPLFNTKSSTSVGQLQSPTLNSPIYMQKQGKNEHLAFNTKSKASTVGSELVL 114

Query: 322 LRTAQTDVHHQALVE 278
           + T    VHH + +E
Sbjct: 115 VSTTVPTVHHVSDLE 129


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,957,698
Number of Sequences: 237096
Number of extensions: 2313335
Number of successful extensions: 5708
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5706
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)