Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14c13
(729 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF318273-1|AAK13421.1| 1220|Drosophila melanogaster metabotropic... 32 0.70
AF145639-1|AAD38614.1| 1221|Drosophila melanogaster BcDNA.GH0731... 32 0.70
AE014297-3037|AAF55916.1| 1221|Drosophila melanogaster CG6706-PB... 32 0.70
AE014297-3036|AAN13882.1| 1220|Drosophila melanogaster CG6706-PA... 32 0.70
U35147-1|AAA79092.1| 354|Drosophila melanogaster TATA-box bindi... 31 1.6
U11718-1|AAA68629.1| 353|Drosophila melanogaster TATA-box bindi... 31 1.6
M38388-1|AAA28926.1| 353|Drosophila melanogaster TATA-consensus... 31 1.6
M38082-1|AAA28931.1| 353|Drosophila melanogaster TATA-box bindi... 31 1.6
AY069663-1|AAL39808.1| 353|Drosophila melanogaster LD44083p pro... 31 1.6
AE014296-1918|AAN11904.1| 1074|Drosophila melanogaster CG32082-P... 31 1.6
AE013599-3256|AAF46754.1| 353|Drosophila melanogaster CG9874-PA... 31 1.6
X16134-1|CAA34260.1| 491|Drosophila melanogaster protein ( Dros... 31 2.1
AE014297-385|ABI31142.1| 1689|Drosophila melanogaster CG34113-PO... 31 2.1
AY060680-1|AAL28228.1| 598|Drosophila melanogaster GH11848p pro... 30 2.8
AE014297-1285|AAN13501.2| 1535|Drosophila melanogaster CG17228-P... 30 2.8
AE013599-2147|AAF58087.2| 7210|Drosophila melanogaster CG18255-P... 30 2.8
AE013599-2141|AAM70936.1| 9270|Drosophila melanogaster CG18255-P... 30 2.8
BT025051-1|ABE73222.1| 147|Drosophila melanogaster IP16055p pro... 29 4.9
AE014296-1757|AAF50200.2| 734|Drosophila melanogaster CG32050-P... 29 6.5
AE014296-515|AAF47691.2| 2252|Drosophila melanogaster CG2083-PA ... 29 8.6
>AF318273-1|AAK13421.1| 1220|Drosophila melanogaster metabotropic
GABA-B receptor subtype2 protein.
Length = 1220
Score = 32.3 bits (70), Expect = 0.70
Identities = 28/116 (24%), Positives = 47/116 (40%)
Frame = -3
Query: 472 KTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEGRLRTAQTDVHH 293
K SI+ H S P+ +Q I Q + QQ Q+HL + + + Q HH
Sbjct: 863 KQSIVEHHS--HAPAPTMMQPIQQQLQQHLQQHQQMQQQHLQQQQHQQMQQQQQQQQHHH 920
Query: 292 QALVEKEGGDVLRNNPLQPKRLEATFEQGGDASINKLGVPEKSETTKSAKCRNGLQ 125
+ L ++ ++ + A GGD S + E+ ++T S +G Q
Sbjct: 921 RHLEKRNSVSAQTDDNIGSITSTAGKRSGGDCS----SMRERRQSTASRHYDSGSQ 972
>AF145639-1|AAD38614.1| 1221|Drosophila melanogaster BcDNA.GH07312
protein.
Length = 1221
Score = 32.3 bits (70), Expect = 0.70
Identities = 28/116 (24%), Positives = 47/116 (40%)
Frame = -3
Query: 472 KTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEGRLRTAQTDVHH 293
K SI+ H S P+ +Q I Q + QQ Q+HL + + + Q HH
Sbjct: 864 KQSIVEHHS--HAPAPTMMQPIQQQLQQHLQQHQQMQQQHLQQQQHQQMQQQQQQQQHHH 921
Query: 292 QALVEKEGGDVLRNNPLQPKRLEATFEQGGDASINKLGVPEKSETTKSAKCRNGLQ 125
+ L ++ ++ + A GGD S + E+ ++T S +G Q
Sbjct: 922 RHLEKRNSVSAQTDDNIGSITSTAGKRSGGDCS----SMRERRQSTASRHYDSGSQ 973
>AE014297-3037|AAF55916.1| 1221|Drosophila melanogaster CG6706-PB,
isoform B protein.
Length = 1221
Score = 32.3 bits (70), Expect = 0.70
Identities = 28/116 (24%), Positives = 47/116 (40%)
Frame = -3
Query: 472 KTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEGRLRTAQTDVHH 293
K SI+ H S P+ +Q I Q + QQ Q+HL + + + Q HH
Sbjct: 864 KQSIVEHHS--HAPAPTMMQPIQQQLQQHLQQHQQMQQQHLQQQQHQQMQQQQQQQQHHH 921
Query: 292 QALVEKEGGDVLRNNPLQPKRLEATFEQGGDASINKLGVPEKSETTKSAKCRNGLQ 125
+ L ++ ++ + A GGD S + E+ ++T S +G Q
Sbjct: 922 RHLEKRNSVSAQTDDNIGSITSTAGKRSGGDCS----SMRERRQSTASRHYDSGSQ 973
>AE014297-3036|AAN13882.1| 1220|Drosophila melanogaster CG6706-PA,
isoform A protein.
Length = 1220
Score = 32.3 bits (70), Expect = 0.70
Identities = 28/116 (24%), Positives = 47/116 (40%)
Frame = -3
Query: 472 KTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEGRLRTAQTDVHH 293
K SI+ H S P+ +Q I Q + QQ Q+HL + + + Q HH
Sbjct: 863 KQSIVEHHS--HAPAPTMMQPIQQQLQQHLQQHQQMQQQHLQQQQHQQMQQQQQQQQHHH 920
Query: 292 QALVEKEGGDVLRNNPLQPKRLEATFEQGGDASINKLGVPEKSETTKSAKCRNGLQ 125
+ L ++ ++ + A GGD S + E+ ++T S +G Q
Sbjct: 921 RHLEKRNSVSAQTDDNIGSITSTAGKRSGGDCS----SMRERRQSTASRHYDSGSQ 972
>U35147-1|AAA79092.1| 354|Drosophila melanogaster TATA-box binding
protein protein.
Length = 354
Score = 31.1 bits (67), Expect = 1.6
Identities = 30/122 (24%), Positives = 51/122 (41%)
Frame = -3
Query: 655 IDTXKHQSHREYNTLGQPVEMLPAKLFHSPAXSLPQTLAPQPTTGKFKNDCSYKNIKSTV 476
I T HQ + + PV +H PA S P +L P P + ++ + ++
Sbjct: 14 IGTPLHQMEADQQIVANPV-------YHPPAVSQPDSLMPAPGSSSVQHQQQQQQSDAS- 65
Query: 475 SKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEGRLRTAQTDVH 296
+ + GH+ + K Q+Q Y+ S S+ QQ Q+ + A G T Q+ +
Sbjct: 66 GGSGLFGHEPSLPLAHK-QMQ----SYQPSASYQQQQQQQQQLQSQAPGGGGSTPQSMMQ 120
Query: 295 HQ 290
Q
Sbjct: 121 PQ 122
>U11718-1|AAA68629.1| 353|Drosophila melanogaster TATA-box binding
protein protein.
Length = 353
Score = 31.1 bits (67), Expect = 1.6
Identities = 27/110 (24%), Positives = 46/110 (41%)
Frame = -3
Query: 655 IDTXKHQSHREYNTLGQPVEMLPAKLFHSPAXSLPQTLAPQPTTGKFKNDCSYKNIKSTV 476
I T HQ + + PV +H PA S P +L P P + ++ + ++
Sbjct: 14 IGTPLHQMEADQQIVANPV-------YHPPAVSQPDSLMPAPGSSSVQHQQQQQQSDAS- 65
Query: 475 SKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEG 326
+ + GH+ + K Q+Q Y+ S S+ QQ Q+ L + G
Sbjct: 66 GGSGLFGHEPSLPLAHK-QMQ----SYQPSASYQQQQQQQQLQSQAPGGG 110
>M38388-1|AAA28926.1| 353|Drosophila melanogaster
TATA-consensus-binding transcriptionfactor TFII protein.
Length = 353
Score = 31.1 bits (67), Expect = 1.6
Identities = 27/110 (24%), Positives = 46/110 (41%)
Frame = -3
Query: 655 IDTXKHQSHREYNTLGQPVEMLPAKLFHSPAXSLPQTLAPQPTTGKFKNDCSYKNIKSTV 476
I T HQ + + PV +H PA S P +L P P + ++ + ++
Sbjct: 14 IGTPLHQMEADQQIVANPV-------YHPPAVSQPDSLMPAPGSSSVQHQQQQQQSDAS- 65
Query: 475 SKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEG 326
+ + GH+ + K Q+Q Y+ S S+ QQ Q+ L + G
Sbjct: 66 GGSGLFGHEPSLPLAHK-QMQ----SYQPSASYQQQQQQQQLQSQAPGGG 110
>M38082-1|AAA28931.1| 353|Drosophila melanogaster TATA-box binding
protein protein.
Length = 353
Score = 31.1 bits (67), Expect = 1.6
Identities = 27/110 (24%), Positives = 46/110 (41%)
Frame = -3
Query: 655 IDTXKHQSHREYNTLGQPVEMLPAKLFHSPAXSLPQTLAPQPTTGKFKNDCSYKNIKSTV 476
I T HQ + + PV +H PA S P +L P P + ++ + ++
Sbjct: 14 IGTPLHQMEADQQIVANPV-------YHPPAVSQPDSLMPAPGSSSVQHQQQQQQSDAS- 65
Query: 475 SKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEG 326
+ + GH+ + K Q+Q Y+ S S+ QQ Q+ L + G
Sbjct: 66 GGSGLFGHEPSLPLAHK-QMQ----SYQPSASYQQQQQQQQLQSQAPGGG 110
>AY069663-1|AAL39808.1| 353|Drosophila melanogaster LD44083p
protein.
Length = 353
Score = 31.1 bits (67), Expect = 1.6
Identities = 27/110 (24%), Positives = 46/110 (41%)
Frame = -3
Query: 655 IDTXKHQSHREYNTLGQPVEMLPAKLFHSPAXSLPQTLAPQPTTGKFKNDCSYKNIKSTV 476
I T HQ + + PV +H PA S P +L P P + ++ + ++
Sbjct: 14 IGTPLHQMEADQQIVANPV-------YHPPAVSQPDSLMPAPGSSSVQHQQQQQQSDAS- 65
Query: 475 SKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEG 326
+ + GH+ + K Q+Q Y+ S S+ QQ Q+ L + G
Sbjct: 66 GGSGLFGHEPSLPLAHK-QMQ----SYQPSASYQQQQQQQQLQSQAPGGG 110
>AE014296-1918|AAN11904.1| 1074|Drosophila melanogaster CG32082-PA
protein.
Length = 1074
Score = 31.1 bits (67), Expect = 1.6
Identities = 29/136 (21%), Positives = 59/136 (43%), Gaps = 4/136 (2%)
Frame = -3
Query: 487 KSTVSKTSIIGHKS---IGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEGRLR 317
K +++ T + G + G P + LQ Q++ Q H QQ Q+H + + + R++
Sbjct: 759 KDSLTSTELYGDEDENIYGVSPQQPPLQQQTQQHQQHQQHQQQQAQQHRS-SYTPKSRMK 817
Query: 316 TAQT-DVHHQALVEKEGGDVLRNNPLQPKRLEATFEQGGDASINKLGVPEKSETTKSAKC 140
+T ++ + E E +R Q ++ + + D ++ G KS T ++
Sbjct: 818 IMKTIEIDIEEPTEAERMSTMRRGQSQDQQQQ---HRKLDKQVSGTGSQHKSLTL--SRT 872
Query: 139 RNGLQDMVYTSYPTST 92
++ Q +P ST
Sbjct: 873 KSNQQQQQQQQFPQST 888
>AE013599-3256|AAF46754.1| 353|Drosophila melanogaster CG9874-PA
protein.
Length = 353
Score = 31.1 bits (67), Expect = 1.6
Identities = 27/110 (24%), Positives = 46/110 (41%)
Frame = -3
Query: 655 IDTXKHQSHREYNTLGQPVEMLPAKLFHSPAXSLPQTLAPQPTTGKFKNDCSYKNIKSTV 476
I T HQ + + PV +H PA S P +L P P + ++ + ++
Sbjct: 14 IGTPLHQMEADQQIVANPV-------YHPPAVSQPDSLMPAPGSSSVQHQQQQQQSDAS- 65
Query: 475 SKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEG 326
+ + GH+ + K Q+Q Y+ S S+ QQ Q+ L + G
Sbjct: 66 GGSGLFGHEPSLPLAHK-QMQ----SYQPSASYQQQQQQQQLQSQAPGGG 110
>X16134-1|CAA34260.1| 491|Drosophila melanogaster protein (
Drosophila Abd-B P3 mRNA. ).
Length = 491
Score = 30.7 bits (66), Expect = 2.1
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = +1
Query: 199 HHHLARRLPQAF*AVMDYCATHHHLLSQPELDGGHQFAQFVNVLPKQMSHSDVLEHS 369
HHH LPQ + + H HL Q + A +VL +Q S HS
Sbjct: 32 HHHAHHHLPQPLHTTSHHHSAHPHLQQQQQQQQHAVVASSPSVLQQQQQQSTPTTHS 88
>AE014297-385|ABI31142.1| 1689|Drosophila melanogaster CG34113-PO,
isoform O protein.
Length = 1689
Score = 30.7 bits (66), Expect = 2.1
Identities = 23/84 (27%), Positives = 39/84 (46%)
Frame = -3
Query: 514 KNDCSYKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSA 335
+N+ + KN++ +TS KS K ++ QLQ + + + S T ++
Sbjct: 666 RNNVANKNMRG---RTSAGQAKSNNKQLTQQQLQRLKKRTSFTPSQTLAAIERQRQRKQL 722
Query: 334 SEGRLRTAQTDVHHQALVEKEGGD 263
S+ + + Q HHQA K GGD
Sbjct: 723 SQQQQQLQQQ--HHQATATKSGGD 744
>AY060680-1|AAL28228.1| 598|Drosophila melanogaster GH11848p
protein.
Length = 598
Score = 30.3 bits (65), Expect = 2.8
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -3
Query: 442 GKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEGRLRTAQTDVH 296
G + Q Q+ Q++GSQ QQNV + NV + + Q H
Sbjct: 165 GSSAQQQQQQNAQQQHQGSQQQQQQNVVQQQNVAQQQHMQQQQQQQQSH 213
>AE014297-1285|AAN13501.2| 1535|Drosophila melanogaster CG17228-PA,
isoform A protein.
Length = 1535
Score = 30.3 bits (65), Expect = 2.8
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -3
Query: 442 GKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEGRLRTAQTDVH 296
G + Q Q+ Q++GSQ QQNV + NV + + Q H
Sbjct: 937 GSSAQQQQQQNAQQQHQGSQQQQQQNVVQQQNVAQQQHMQQQQQQQQSH 985
>AE013599-2147|AAF58087.2| 7210|Drosophila melanogaster CG18255-PD,
isoform D protein.
Length = 7210
Score = 30.3 bits (65), Expect = 2.8
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 334 SEGRLRTAQTDVHHQALVEKEGGDVLRNNPLQPKRLEATFEQGGDASINKLG-VPEKSE 161
SEG++ + + E VL L+ K LEA+ E+ GD + K PE SE
Sbjct: 2648 SEGKIEEPKKPEEMDTEAKSEKATVLDKQVLEEKELEASAEKQGDQDVEKKSQKPEVSE 2706
>AE013599-2141|AAM70936.1| 9270|Drosophila melanogaster CG18255-PA,
isoform A protein.
Length = 9270
Score = 30.3 bits (65), Expect = 2.8
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 334 SEGRLRTAQTDVHHQALVEKEGGDVLRNNPLQPKRLEATFEQGGDASINKLG-VPEKSE 161
SEG++ + + E VL L+ K LEA+ E+ GD + K PE SE
Sbjct: 2648 SEGKIEEPKKPEEMDTEAKSEKATVLDKQVLEEKELEASAEKQGDQDVEKKSQKPEVSE 2706
>BT025051-1|ABE73222.1| 147|Drosophila melanogaster IP16055p
protein.
Length = 147
Score = 29.5 bits (63), Expect = 4.9
Identities = 26/91 (28%), Positives = 44/91 (48%)
Frame = -3
Query: 547 TLAPQPTTGKFKNDCSYKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQ 368
T+ + + +N+ ++K +ST ++TS+ H K KNQ+Q I Y + +QQ
Sbjct: 16 TIGEEENSAIVENEIAHKCSQST-AETSM--HN---KCERKNQMQ-ISTNYNAEKECSQQ 68
Query: 367 NVQEHLNVTSASEGRLRTAQTDVHHQALVEK 275
N E VT R A+ ++ HQ V +
Sbjct: 69 NQCEAPRVTGKLNKRHSYAKENLRHQKEVRR 99
>AE014296-1757|AAF50200.2| 734|Drosophila melanogaster CG32050-PA
protein.
Length = 734
Score = 29.1 bits (62), Expect = 6.5
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
Frame = -3
Query: 583 KLFHSPAXSLPQTLAPQPTTGKFKNDCSYKNIKSTVSKTSIIGH-KSIGKIPSKNQLQHI 407
KL + S P T P P S ++ ++ ++T G S+ K H+
Sbjct: 92 KLLQRQSSSTPSTPVPPPLPSPIMRSKSGQDSQAKENQTKRQGRIYSLETATEKQHEAHV 151
Query: 406 -YNQYKGSQSHTQQNVQEHL-----NVTSASEGRLRTAQT 305
Q + +H QQ++ EHL + +A + R+AQT
Sbjct: 152 EIAQLEAKYAHIQQSIAEHLLQIDAYMENAKQALQRSAQT 191
>AE014296-515|AAF47691.2| 2252|Drosophila melanogaster CG2083-PA
protein.
Length = 2252
Score = 28.7 bits (61), Expect = 8.6
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = -3
Query: 424 NQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEGRLRTAQTDVHHQALVEKE 272
+Q Q Y Q + Q H QQ Q+HL A + L Q + Q K+
Sbjct: 164 SQQQQQYQQPQQQQQHFQQQQQQHLQQQHAQQQHLPQQQHQITAQIQTMKD 214
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,343,291
Number of Sequences: 53049
Number of extensions: 735019
Number of successful extensions: 2565
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2558
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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