Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte14c13
(729 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical pr... 33 0.21
AF047655-5|AAC04399.1| 820|Caenorhabditis elegans Hypothetical ... 31 0.64
Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical pr... 31 1.1
U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ... 30 1.9
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport... 30 1.9
U50071-3|AAA93444.1| 1867|Caenorhabditis elegans Uncoordinated p... 29 2.6
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 29 2.6
U39847-2|AAB41828.1| 1867|Caenorhabditis elegans AO66 ankyrin pr... 29 2.6
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 29 2.6
U21732-1|AAA85853.1| 970|Caenorhabditis elegans UNC-44 protein. 29 2.6
Z81477-4|CAB03925.2| 279|Caenorhabditis elegans Hypothetical pr... 29 3.4
U23183-3|AAA64340.3| 496|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF016429-3|AAB65366.1| 383|Caenorhabditis elegans Hypothetical ... 29 4.5
U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical pr... 28 7.9
>Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical
protein T21B10.3 protein.
Length = 1170
Score = 33.1 bits (72), Expect = 0.21
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +2
Query: 383 LRAFVLIINMLQLILAGNFPYRLVTNYR---CFANSGLNILVTTIV 511
L+A + + MLQ +LA N R++TNY+ F + G N L T+I+
Sbjct: 475 LKAVEIFVKMLQRLLANNNNARMLTNYQFSSSFFDDGNNYLPTSII 520
>AF047655-5|AAC04399.1| 820|Caenorhabditis elegans Hypothetical
protein C17B7.5 protein.
Length = 820
Score = 31.5 bits (68), Expect = 0.64
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = -3
Query: 535 QPTTGKFKNDC-SYKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQ 359
+ TT ND S +++ ST GH +G+I +N ++ Y+ + + SHTQ N
Sbjct: 611 ETTTPSTSNDTESNQDVISTPLLAWRQGHIDLGRISRENHVKFTYDVMRDTYSHTQLNGS 670
Query: 358 EHLNVTSASEGRL 320
++ A+ R+
Sbjct: 671 SYVPYNVANIERV 683
>Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical
protein C35C5.6 protein.
Length = 1224
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = -3
Query: 460 IGHKSIGKIPSKNQLQ-HIYNQYKGSQSHTQQNVQEHLNVTSASEGRLRTAQTDVHHQAL 284
+ + S+ + PS N+ + + + + Q H + + EH+ VTS+ + ++ + +
Sbjct: 314 VSNDSVLRYPSGNKEEMKLQSDFSSPQGHKRHHSDEHVRVTSSMSNGIERNESFGNESGI 373
Query: 283 VEKEGGDVLRNNPLQPK 233
V +R P + K
Sbjct: 374 VSNGSSPSIREEPTKVK 390
>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
related protein 2 protein.
Length = 1272
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 466 SIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASE 329
+++GH GK L+ YNQ KG N++ +LN++S E
Sbjct: 1060 ALVGHSGCGKSTIMGLLERFYNQDKGMIMIDGDNIR-NLNISSLRE 1104
>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
PGP-2 protein.
Length = 1272
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -3
Query: 466 SIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASE 329
+++GH GK L+ YNQ KG N++ +LN++S E
Sbjct: 1060 ALVGHSGCGKSTIMGLLERFYNQDKGMIMIDGDNIR-NLNISSLRE 1104
>U50071-3|AAA93444.1| 1867|Caenorhabditis elegans Uncoordinated
protein 44, isoform c protein.
Length = 1867
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 4/129 (3%)
Frame = -3
Query: 682 ENIKEPIFPIDTXKHQSHREYNTLGQPVEMLPAK----LFHSPAXSLPQTLAPQPTTGKF 515
ENI + P++ + Q E N L PA+ + S + +P+ + +
Sbjct: 1703 ENIVDRTVPLNEDEQQKWEELNRLADESSPSPAQRSTIVAESTSEQVPEDVEQSVESESH 1762
Query: 514 KNDCSYKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSA 335
+ D I +T TS I G P++ ++ +++ + H ++H S
Sbjct: 1763 REDDG--TIVTTTVTTSHISESPSGS-PTRRSVEPEEHRHSQHEDHEASGAEQHSGQDSG 1819
Query: 334 SEGRLRTAQ 308
+ + TA+
Sbjct: 1820 TTQKKETAE 1828
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 4/129 (3%)
Frame = -3
Query: 682 ENIKEPIFPIDTXKHQSHREYNTLGQPVEMLPAK----LFHSPAXSLPQTLAPQPTTGKF 515
ENI + P++ + Q E N L PA+ + S + +P+ + +
Sbjct: 1709 ENIVDRTVPLNEDEQQKWEELNRLADESSPSPAQRSTIVAESTSEQVPEDVEQSVESESH 1768
Query: 514 KNDCSYKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSA 335
+ D I +T TS I G P++ ++ +++ + H ++H S
Sbjct: 1769 REDDG--TIVTTTVTTSHISESPSGS-PTRRSVEPEEHRHSQHEDHEASGAEQHSGQDSG 1825
Query: 334 SEGRLRTAQ 308
+ + TA+
Sbjct: 1826 TTQKKETAE 1834
>U39847-2|AAB41828.1| 1867|Caenorhabditis elegans AO66 ankyrin
protein.
Length = 1867
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 4/129 (3%)
Frame = -3
Query: 682 ENIKEPIFPIDTXKHQSHREYNTLGQPVEMLPAK----LFHSPAXSLPQTLAPQPTTGKF 515
ENI + P++ + Q E N L PA+ + S + +P+ + +
Sbjct: 1703 ENIVDRTVPLNEDEQQKWEELNRLADESSPSPAQRSTIVAESTSEQVPEDVEQSVESESH 1762
Query: 514 KNDCSYKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSA 335
+ D I +T TS I G P++ ++ +++ + H ++H S
Sbjct: 1763 REDDG--TIVTTTVTTSHISESPSGS-PTRRSVEPEEHRHSQHEDHEASGAEQHSGQDSG 1819
Query: 334 SEGRLRTAQ 308
+ + TA+
Sbjct: 1820 TTQKKETAE 1828
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 4/129 (3%)
Frame = -3
Query: 682 ENIKEPIFPIDTXKHQSHREYNTLGQPVEMLPAK----LFHSPAXSLPQTLAPQPTTGKF 515
ENI + P++ + Q E N L PA+ + S + +P+ + +
Sbjct: 1709 ENIVDRTVPLNEDEQQKWEELNRLADESSPSPAQRSTIVAESTSEQVPEDVEQSVESESH 1768
Query: 514 KNDCSYKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSA 335
+ D I +T TS I G P++ ++ +++ + H ++H S
Sbjct: 1769 REDDG--TIVTTTVTTSHISESPSGS-PTRRSVEPEEHRHSQHEDHEASGAEQHSGQDSG 1825
Query: 334 SEGRLRTAQ 308
+ + TA+
Sbjct: 1826 TTQKKETAE 1834
>U21732-1|AAA85853.1| 970|Caenorhabditis elegans UNC-44 protein.
Length = 970
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/129 (19%), Positives = 51/129 (39%), Gaps = 4/129 (3%)
Frame = -3
Query: 682 ENIKEPIFPIDTXKHQSHREYNTLGQPVEMLPAK----LFHSPAXSLPQTLAPQPTTGKF 515
ENI + P++ + Q E N L PA+ + S + +P+ + +
Sbjct: 806 ENIVDRTVPLNEDEQQKWEELNRLADESSPSPAQRSTIVAESTSEQVPEDVEQSVESESH 865
Query: 514 KNDCSYKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSA 335
+ D I +T TS I G P++ ++ +++ + H ++H S
Sbjct: 866 REDDG--TIVTTTVTTSHISESPSGS-PTRRSVEPEEHRHSQHEDHEASGAEQHSGQDSG 922
Query: 334 SEGRLRTAQ 308
+ + TA+
Sbjct: 923 TTQKKETAE 931
>Z81477-4|CAB03925.2| 279|Caenorhabditis elegans Hypothetical
protein C27C7.5 protein.
Length = 279
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 425 LAGNFPYRLVTNYRCFANSGLNILVTTIVFKFS 523
++G+FP ++ + + F NS NI T ++KFS
Sbjct: 102 ISGSFPSKMRSMWETFTNSNYNITFTGDLWKFS 134
>U23183-3|AAA64340.3| 496|Caenorhabditis elegans Hypothetical
protein K01A12.3 protein.
Length = 496
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Frame = -1
Query: 261 CCAIIHYSLKG--LRQPSSKVVMLQLINLVSLKRAK--QLRVPNVGTAYKIWYIRLTQPR 94
C AI +Y K L Q S V +V + A L P +G +W I +PR
Sbjct: 154 CIAICYYGTKARALNQVSVAVACSASTWIVGIAAALVGTLSQPMIGIQRTMWSISFLEPR 213
Query: 93 PH 88
PH
Sbjct: 214 PH 215
>AF016429-3|AAB65366.1| 383|Caenorhabditis elegans Hypothetical
protein T21H3.5 protein.
Length = 383
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/34 (26%), Positives = 20/34 (58%)
Frame = -3
Query: 691 FQQENIKEPIFPIDTXKHQSHREYNTLGQPVEML 590
F+Q+N+ +F +D + + +T+G P+ M+
Sbjct: 318 FRQKNVNLSVFVVDNQQQADQLQMSTVGAPISMI 351
>U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical protein
B0416.1 protein.
Length = 1203
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = -3
Query: 553 PQTLAPQPTTGKFKNDCSYKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHT 374
P+ L P PT G +D S N +ST S+ G + + + S +++ H + + S S +
Sbjct: 845 PKQLLPPPTKGVSSDDDSQHN-RSTAK--SVSGRQFVPSLGSVSEVDHSTGEEQSSDSES 901
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,939,380
Number of Sequences: 27780
Number of extensions: 365428
Number of successful extensions: 1251
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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