Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14c12
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    29   0.76 
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    28   1.8  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    26   5.4  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    26   5.4  
SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    26   7.1  

>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 8/70 (11%)
 Frame = -3

Query: 656 KAYSQLLSLIANG---GYNVVHQFQDRIWVEGS-----DYTIEIKLVCETRNLEHALELK 501
           K Y Q+L LI N    G  ++   Q + + E +     D +   +L  E  NLE ALEL 
Sbjct: 613 KDYEQVLHLIQNSNLVGQAIIAYLQKKGYPEIALQFVEDPSTRFELALECGNLETALELA 672

Query: 500 RIIERAYPYS 471
           R I+R   +S
Sbjct: 673 RTIDRPEVWS 682


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
 Frame = -3

Query: 773 VAILSGGNIDYTSLIRSLQRGLSVIGRLVRFSVGVKDDPKAYSQLLSLIANGGYNVVHQF 594
           V ILSG N+D+  L    +R    + + V  SV + + P ++  L ++I       + +F
Sbjct: 397 VCILSGANMDFDRLRFIAERADLGLNKEVFLSVTIPERPGSFEALHNIITP---RSITEF 453

Query: 593 QDRIWVEGSDY-TIEIKLVCETRNLEHALELKRIIER 486
             R   +  DY  I    V + R  E  L L++I E+
Sbjct: 454 SYR--YDNDDYANIYTSFVVKDRATELPLILQQISEQ 488


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 23/105 (21%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
 Frame = -3

Query: 743  YTSLIRSLQRGLSVIGRLVRFSVGVKDDPKAYSQLLS---LIANGGYNVVHQFQDRIWVE 573
            +T LI  L+R LS +  ++  +V    + +A S + S    +     + +  ++D+I +E
Sbjct: 1103 HTVLISDLKRDLSALSTVLS-NVSAIAELQAKSSIKSKPLTLKTATESEIKGYRDQIQLE 1161

Query: 572  GSDYTIEIKLVCETRNLEHALELKRIIERAYPYSSEFETEPFNDK 438
              +   + +   +       L+ KR+++R   +S E +T   N+K
Sbjct: 1162 VLNLKPDSEARLQAIERSELLQKKRLLQRVDEFSKEVKTFVENEK 1206


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 172 VYHVSPWDYFNEVKLNVICI 113
           V+ + PW +FNE   + +C+
Sbjct: 227 VFFLKPWKHFNETSGDTVCV 246


>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 761 SGGNIDYTSLIRSLQRGLSVIGRLVRFSVGVKDDPKAY 648
           S GN D  SLI S ++  S+  ++  FS  ++D  +AY
Sbjct: 423 SQGNYDPLSLIYSSEKQESIKRKMADFSFMLRDYKRAY 460


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,172
Number of Sequences: 5004
Number of extensions: 54494
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)