Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte14c12
         (793 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0389 + 3437383-3437651,3438279-3438396,3438914-3439018,343...    31   1.0  
01_05_0429 + 22070636-22070662,22071490-22071577,22071908-220721...    29   5.6  
01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,266...    28   7.4  

>08_01_0389 +
           3437383-3437651,3438279-3438396,3438914-3439018,
           3439983-3440180,3440269-3440355
          Length = 258

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 320 CFHFGCNKFNIHLITTKVNGNFDILVSFV 234
           C  F  +KFN+H+I     GNFD++ SF+
Sbjct: 119 CLSF-VSKFNMHVIPVDKTGNFDMMYSFL 146


>01_05_0429 +
           22070636-22070662,22071490-22071577,22071908-22072168,
           22072925-22073161,22073251-22073375,22074093-22074569,
           22074655-22075569
          Length = 709

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 7/76 (9%)
 Frame = -3

Query: 785 TKYVVAILSGGNIDYTSLIRSLQRGLSVI---GRLVRFSVGVKDDPKAYSQLLSLIANGG 615
           ++YV A++    +D ++L+++L+RG++V    G  V  S  +K   +A    +   AN  
Sbjct: 102 SEYVKALVKVDRLDDSTLLKTLRRGMAVSGGEGERVGSSSALKSAGQATKDGILGTANAP 161

Query: 614 YNVV----HQFQDRIW 579
            ++V      F+D+IW
Sbjct: 162 IHMVTSETGHFKDQIW 177


>01_01_0328 - 2664412-2664535,2665388-2665465,2667784-2667895,
            2668344-2668410,2668473-2668562,2668672-2668787,
            2668999-2671924
          Length = 1170

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 452  VQSRTRRSKDTPSLLSFSVLRHVLDF*FHKLI*SRWYSRCLP 577
            V+SR  R+K+T  L+     R  L+F  +K     WYS+C P
Sbjct: 977  VESRVARAKETVVLVYLKCYRKQLNFCGNK-----WYSKCSP 1013


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,583,940
Number of Sequences: 37544
Number of extensions: 292989
Number of successful extensions: 547
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)